Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002094
(portability-ldpred2_740)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoarthrosis osteoarthritis 827,887
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002094/ScoringFiles/PGS002094.txt.gz
PGS002093
(portability-ldpred2_735.3)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hallux valgus (Bunion) Hallux valgus 773,461
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002093/ScoringFiles/PGS002093.txt.gz
PGS002092
(portability-ldpred2_728.71)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Contracture of palmar fascia [Dupuytren's disease] Dupuytren Contracture 484,484
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002092/ScoringFiles/PGS002092.txt.gz
PGS002091
(portability-ldpred2_717)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Polymyalgia rheumatica polymyalgia rheumatica 129,938
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002091/ScoringFiles/PGS002091.txt.gz
PGS002090
(portability-ldpred2_716)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other arthropathies Arthropathy 859,336
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002090/ScoringFiles/PGS002090.txt.gz
PGS002089
(portability-ldpred2_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 22,026
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002089/ScoringFiles/PGS002089.txt.gz
PGS002088
(portability-ldpred2_714.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 95,083
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002088/ScoringFiles/PGS002088.txt.gz
PGS002087
(portability-ldpred2_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 206,669
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002087/ScoringFiles/PGS002087.txt.gz
PGS002086
(portability-ldpred2_704)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diseases of hair and hair follicles disorder of pilosebaceous unit 160,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002086/ScoringFiles/PGS002086.txt.gz
PGS002085
(portability-ldpred2_702.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Seborrheic keratosis seborrheic keratosis 481,233
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002085/ScoringFiles/PGS002085.txt.gz
PGS002084
(portability-ldpred2_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 403,417
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002084/ScoringFiles/PGS002084.txt.gz
PGS002083
(portability-ldpred2_696.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Psoriasis psoriasis 71,744
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002083/ScoringFiles/PGS002083.txt.gz
PGS002082
(portability-ldpred2_695.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lupus (localized and systemic) lupus erythematosus 361,553
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002082/ScoringFiles/PGS002082.txt.gz
PGS002081
(portability-ldpred2_681)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Superficial cellulitis and abscess cellulitis 640,921
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002081/ScoringFiles/PGS002081.txt.gz
PGS002080
(portability-ldpred2_654.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rhesus isoimmunization in pregnancy Rh isoimmunization 32,414
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002080/ScoringFiles/PGS002080.txt.gz
PGS002079
(portability-ldpred2_626.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Irregular menstrual cycle/bleeding menstrual cycle attribute 719,789
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002079/ScoringFiles/PGS002079.txt.gz
PGS002078
(portability-ldpred2_618)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Genital prolapse prolapse of female genital organ 774,553
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002078/ScoringFiles/PGS002078.txt.gz
PGS002077
(portability-ldpred2_615)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Endometriosis endometriosis 534,802
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002077/ScoringFiles/PGS002077.txt.gz
PGS002076
(portability-ldpred2_600)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hyperplasia of prostate benign prostatic hyperplasia 627,341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002076/ScoringFiles/PGS002076.txt.gz
PGS002075
(portability-ldpred2_594)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urinary calculus urolithiasis 731,196
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002075/ScoringFiles/PGS002075.txt.gz
PGS002074
(portability-ldpred2_593)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hematuria Hematuria 664,167
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002074/ScoringFiles/PGS002074.txt.gz
PGS002073
(portability-ldpred2_575)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other biliary tract disease biliary tract disorder 363,801
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002073/ScoringFiles/PGS002073.txt.gz
PGS002072
(portability-ldpred2_574)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholelithiasis and cholecystitis Cholecystitis,
cholelithiasis		 428,587
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002072/ScoringFiles/PGS002072.txt.gz
PGS002071
(portability-ldpred2_571.5)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other chronic nonalcoholic liver disease liver disorder 352,506
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002071/ScoringFiles/PGS002071.txt.gz
PGS002070
(portability-ldpred2_565.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Anal and rectal polyp polyp of rectum,
anal polyp		 584,133
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002070/ScoringFiles/PGS002070.txt.gz
PGS002069
(portability-ldpred2_564)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Functional digestive disorders digestive system disorder 747,820
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002069/ScoringFiles/PGS002069.txt.gz
PGS002068
(portability-ldpred2_562.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diverticulosis Colonic diverticula 831,212
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002068/ScoringFiles/PGS002068.txt.gz
PGS002067
(portability-ldpred2_557.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Celiac disease celiac disease 58,231
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002067/ScoringFiles/PGS002067.txt.gz
PGS002066
(portability-ldpred2_555.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ulcerative colitis ulcerative colitis 566,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002066/ScoringFiles/PGS002066.txt.gz
PGS002065
(portability-ldpred2_550.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Inguinal hernia Inguinal hernia 691,268
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002065/ScoringFiles/PGS002065.txt.gz
PGS002064
(portability-ldpred2_540)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Appendiceal conditions disorder of appendix 497,422
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002064/ScoringFiles/PGS002064.txt.gz
PGS002063
(portability-ldpred2_530.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Esophagitis, GERD and related diseases esophagitis,
gastroesophageal reflux disease		 836,413
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002063/ScoringFiles/PGS002063.txt.gz
PGS002062
(portability-ldpred2_496)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Chronic airway obstruction chronic obstructive pulmonary disease 811,003
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002062/ScoringFiles/PGS002062.txt.gz
PGS002061
(portability-ldpred2_495)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Asthma asthma 793,375
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002061/ScoringFiles/PGS002061.txt.gz
PGS002060
(portability-ldpred2_471)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Nasal polyps Nasal polyposis 553,242
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002060/ScoringFiles/PGS002060.txt.gz
PGS002059
(portability-ldpred2_459.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Circulatory disease NEC vascular disorder 604,572
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002059/ScoringFiles/PGS002059.txt.gz
PGS002058
(portability-ldpred2_455)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hemorrhoids hemorrhoid 780,418
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002058/ScoringFiles/PGS002058.txt.gz
PGS002057
(portability-ldpred2_454)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Varicose veins Varicose veins 760,630
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002057/ScoringFiles/PGS002057.txt.gz
PGS002056
(portability-ldpred2_451)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phlebitis and thrombophlebitis Thrombophlebitis,
phlebitis		 114,679
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002056/ScoringFiles/PGS002056.txt.gz
PGS002055
(portability-ldpred2_443.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Peripheral vascular disease, unspecified peripheral vascular disease 599,514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002055/ScoringFiles/PGS002055.txt.gz
PGS002054
(portability-ldpred2_442.11)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal aortic aneurysm abdominal aortic aneurysm 592,187
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002054/ScoringFiles/PGS002054.txt.gz
PGS002053
(portability-ldpred2_433)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cerebrovascular disease cerebrovascular disorder 599,726
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002053/ScoringFiles/PGS002053.txt.gz
PGS002052
(portability-ldpred2_433.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Occlusion and stenosis of precerebral arteries occlusion precerebral artery 490,459
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002052/ScoringFiles/PGS002052.txt.gz
PGS002051
(portability-ldpred2_428)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Congestive heart failure; nonhypertensive congestive heart failure 642,241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002051/ScoringFiles/PGS002051.txt.gz
PGS002050
(portability-ldpred2_427.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Atrial fibrillation and flutter atrial fibrillation,
atrial flutter		 554,908
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002050/ScoringFiles/PGS002050.txt.gz
PGS002049
(portability-ldpred2_415)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulmonary heart disease cor pulmonale 222,371
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002049/ScoringFiles/PGS002049.txt.gz
PGS002048
(portability-ldpred2_411.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Coronary atherosclerosis coronary atherosclerosis 762,124
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002048/ScoringFiles/PGS002048.txt.gz
PGS002047
(portability-ldpred2_401)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 918,325
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002047/ScoringFiles/PGS002047.txt.gz
PGS002046
(portability-ldpred2_383)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Otosclerosis otosclerosis 570,308
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002046/ScoringFiles/PGS002046.txt.gz
PGS002045
(portability-ldpred2_371)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Inflammation of the eye eye inflammation,
eye disorder		 527,030
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002045/ScoringFiles/PGS002045.txt.gz
Showing 4951 to 5000 of 6972 rows