Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001994
(portability-PLR_myopia)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Myopia diagnosis Myopia 30,217
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001994/ScoringFiles/PGS001994.txt.gz
PGS001993
(portability-PLR_more_sunscreen)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Use of sun/uv protection sun exposure measurement 17,282
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001993/ScoringFiles/PGS001993.txt.gz
PGS001992
(portability-PLR_more_evening)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Morning/evening person (chronotype) chronotype measurement 61,542
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001992/ScoringFiles/PGS001992.txt.gz
PGS001991
(portability-PLR_monocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Monocyte percentage monocyte percentage of leukocytes 41,887
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001991/ScoringFiles/PGS001991.txt.gz
PGS001990
(portability-PLR_MCV)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean corpuscular volume erythrocyte volume 47,916
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001990/ScoringFiles/PGS001990.txt.gz
PGS001989
(portability-PLR_MCH)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean corpuscular hemoglobin mean corpuscular hemoglobin 44,174
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001989/ScoringFiles/PGS001989.txt.gz
PGS001988
(portability-PLR_M_log_testosterone)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Testosterone (male only) testosterone measurement,
male		 3,985
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001988/ScoringFiles/PGS001988.txt.gz
PGS001987
(portability-PLR_M_less_hair)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair/balding pattern balding measurement 23,692
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001987/ScoringFiles/PGS001987.txt.gz
PGS001986
(portability-PLR_lymphocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte percentage lymphocyte percentage of leukocytes 66,778
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001986/ScoringFiles/PGS001986.txt.gz
PGS001985
(portability-PLR_logMAR)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 logMAR in round (left/right) visual acuity measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001985/ScoringFiles/PGS001985.txt.gz
PGS001984
(portability-PLR_log_water_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body water mass whole body water mass 127,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001984/ScoringFiles/PGS001984.txt.gz
PGS001983
(portability-PLR_log_waist_circ)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Waist circumference waist circumference 96,496
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001983/ScoringFiles/PGS001983.txt.gz
PGS001982
(portability-PLR_log_vitaminD)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Vitamin D vitamin D level 35,123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001982/ScoringFiles/PGS001982.txt.gz
PGS001981
(portability-PLR_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 6,324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001981/ScoringFiles/PGS001981.txt.gz
PGS001980
(portability-PLR_log_urea)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urea urea measurement 56,782
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001980/ScoringFiles/PGS001980.txt.gz
PGS001979
(portability-PLR_log_triglycerides)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Triglycerides triglyceride measurement 71,203
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001979/ScoringFiles/PGS001979.txt.gz
PGS001978
(portability-PLR_log_sleep)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleep duration sleep duration trait 40,037
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001978/ScoringFiles/PGS001978.txt.gz
PGS001977
(portability-PLR_log_SHBG)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sex hormone binding globulin (SHBG) sex hormone-binding globulin measurement 51,427
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001977/ScoringFiles/PGS001977.txt.gz
PGS001976
(portability-PLR_log_reticulocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reticulocyte count reticulocyte count 75,033
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001976/ScoringFiles/PGS001976.txt.gz
PGS001975
(portability-PLR_log_pulse_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulse rate, automated reading heart rate 62,254
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001975/ScoringFiles/PGS001975.txt.gz
PGS001974
(portability-PLR_log_potassium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Potassium in urine urine potassium amount 21,512
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001974/ScoringFiles/PGS001974.txt.gz
PGS001973
(portability-PLR_log_platelet)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet count platelet count 60,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001973/ScoringFiles/PGS001973.txt.gz
PGS001972
(portability-PLR_log_platelet_width)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet distribution width platelet component distribution width 46,157
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001972/ScoringFiles/PGS001972.txt.gz
PGS001971
(portability-PLR_log_platelet_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean platelet (thrombocyte) volume platelet volume 65,450
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001971/ScoringFiles/PGS001971.txt.gz
PGS001970
(portability-PLR_log_platelet_crit)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet crit platelet crit 56,402
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001970/ScoringFiles/PGS001970.txt.gz
PGS001969
(portability-PLR_log_neutrophil)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Neutrophil count neutrophil count 71,566
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001969/ScoringFiles/PGS001969.txt.gz
PGS001968
(portability-PLR_log_monocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Monocyte count monocyte count 46,673
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001968/ScoringFiles/PGS001968.txt.gz
PGS001967
(portability-PLR_log_microalbumin_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Microalbumin in urine urinary microalbumin measurement 948
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001967/ScoringFiles/PGS001967.txt.gz
PGS001966
(portability-PLR_log_mean_carotid_IMT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean carotid IMT (intima-medial thickness) at 120/150/210/240 degrees carotid artery thickness 11,600
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001966/ScoringFiles/PGS001966.txt.gz
PGS001965
(portability-PLR_log_lymphocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte count lymphocyte count 76,535
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001965/ScoringFiles/PGS001965.txt.gz
PGS001964
(portability-PLR_log_log_gammaGT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Gamma-glutamyl transferase serum gamma-glutamyl transferase measurement 76,069
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001964/ScoringFiles/PGS001964.txt.gz
PGS001963
(portability-PLR_log_lipoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lipoprotein A lipoprotein A measurement 7,887
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001963/ScoringFiles/PGS001963.txt.gz
PGS001962
(portability-PLR_log_leukocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 White blood cell (leukocyte) count leukocyte quantity 80,228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001962/ScoringFiles/PGS001962.txt.gz
PGS001961
(portability-PLR_log_impedance)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Impedance of whole body body composition measurement 119,500
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001961/ScoringFiles/PGS001961.txt.gz
PGS001960
(portability-PLR_log_IGF1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 IGF-1 IGF-1 measurement 87,149
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001960/ScoringFiles/PGS001960.txt.gz
PGS001959
(portability-PLR_log_HLR_reticulocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 High light scatter reticulocyte count reticulocyte amount 78,803
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001959/ScoringFiles/PGS001959.txt.gz
PGS001958
(portability-PLR_log_hip_circ)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hip circumference hip circumference 103,123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001958/ScoringFiles/PGS001958.txt.gz
PGS001957
(portability-PLR_log_heel_SoS)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Speed of sound through heel velocity of sound measurement 65,064
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001957/ScoringFiles/PGS001957.txt.gz
PGS001956
(portability-PLR_log_heel_BUA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Heel Broadband ultrasound attenuation, direct entry heel bone mineral density 69,537
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001956/ScoringFiles/PGS001956.txt.gz
PGS001955
(portability-PLR_log_heel_BMD)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Heel bone mineral density (BMD) heel bone mineral density 73,565
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001955/ScoringFiles/PGS001955.txt.gz
PGS001954
(portability-PLR_log_HDL)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 HDL cholesterol high density lipoprotein cholesterol measurement 85,429
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001954/ScoringFiles/PGS001954.txt.gz
PGS001953
(portability-PLR_log_HbA1c)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glycated haemoglobin (HbA1c) HbA1c measurement 46,566
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001953/ScoringFiles/PGS001953.txt.gz
PGS001952
(portability-PLR_log_glucose)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glucose glucose measurement 14,811
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001952/ScoringFiles/PGS001952.txt.gz
PGS001951
(portability-PLR_log_fat_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat mass fat pad mass 107,776
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001951/ScoringFiles/PGS001951.txt.gz
PGS001950
(portability-PLR_log_fat_free_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat-free mass lean body mass 128,827
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001950/ScoringFiles/PGS001950.txt.gz
PGS001949
(portability-PLR_log_eosinophil_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Eosinophil percentage eosinophil percentage of leukocytes 9,236
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001949/ScoringFiles/PGS001949.txt.gz
PGS001948
(portability-PLR_log_ECG_QRS_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QRS duration QRS duration 1,967
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001948/ScoringFiles/PGS001948.txt.gz
PGS001947
(portability-PLR_log_cystatinC)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 84,459
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001947/ScoringFiles/PGS001947.txt.gz
PGS001946
(portability-PLR_log_CRP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 71,444
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001946/ScoringFiles/PGS001946.txt.gz
PGS001945
(portability-PLR_log_creatinine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Creatinine serum creatinine amount 76,800
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001945/ScoringFiles/PGS001945.txt.gz
Showing 5051 to 5100 of 6972 rows