Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001904
(portability-PLR_ECG_PQ_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PQ interval PR interval 826
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001904/ScoringFiles/PGS001904.txt.gz
PGS001903
(portability-PLR_ECG_PP_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PP interval PP interval 4,368
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001903/ScoringFiles/PGS001903.txt.gz
PGS001902
(portability-PLR_ECG_P_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 P duration P wave duration 640
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001902/ScoringFiles/PGS001902.txt.gz
PGS001901
(portability-PLR_drink_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol drinker status alcohol drinking 1,065
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001901/ScoringFiles/PGS001901.txt.gz
PGS001900
(portability-PLR_diastolic_BP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diastolic blood pressure, automated reading diastolic blood pressure 66,335
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001900/ScoringFiles/PGS001900.txt.gz
PGS001899
(portability-PLR_depression_feelings)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Recent feelings of depression depressive symptom measurement 2,434
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001899/ScoringFiles/PGS001899.txt.gz
PGS001898
(portability-PLR_depressed_for_1w)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever depressed for a whole week depressive symptom measurement 5,777
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001898/ScoringFiles/PGS001898.txt.gz
PGS001897
(portability-PLR_darker_skin0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin color Abnormal skin pigmentation 15,817
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001897/ScoringFiles/PGS001897.txt.gz
PGS001896
(portability-PLR_darker_hair0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair color (natural, before greying) strand of hair color 31,036
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001896/ScoringFiles/PGS001896.txt.gz
PGS001895
(portability-PLR_cholesterol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholesterol total cholesterol measurement 16,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001895/ScoringFiles/PGS001895.txt.gz
PGS001894
(portability-PLR_celiac_gluten)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diagnosed with coeliac disease or gluten sensitivity celiac disease 484
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001894/ScoringFiles/PGS001894.txt.gz
PGS001893
(portability-PLR_calcium)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Calcium calcium measurement 48,395
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001893/ScoringFiles/PGS001893.txt.gz
PGS001892
(portability-PLR_birth_weight)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Birth weight birth weight 35,060
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001892/ScoringFiles/PGS001892.txt.gz
PGS001891
(portability-PLR_bad_hearing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hearing difficulty/problems hearing disorder 19,960
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001891/ScoringFiles/PGS001891.txt.gz
PGS001890
(portability-PLR_avMSE)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 avMSE visual acuity measurement 44,864
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001890/ScoringFiles/PGS001890.txt.gz
PGS001889
(portability-PLR_apoB)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein B apolipoprotein B measurement 16,952
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001889/ScoringFiles/PGS001889.txt.gz
PGS001888
(portability-PLR_apoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein A apolipoprotein A 1 measurement 74,596
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001888/ScoringFiles/PGS001888.txt.gz
PGS001887
(portability-PLR_ankle_spacing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankle spacing width anthropometric measurement 89,827
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001887/ScoringFiles/PGS001887.txt.gz
PGS001886
(portability-PLR_albumin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Albumin serum albumin amount 60,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001886/ScoringFiles/PGS001886.txt.gz
PGS001885
(portability-PLR_960.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Allergy/adverse effect of penicillin drug allergy 95
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001885/ScoringFiles/PGS001885.txt.gz
PGS001884
(portability-PLR_785)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal pain Abdominal pain 2,796
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001884/ScoringFiles/PGS001884.txt.gz
PGS001883
(portability-PLR_743.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoporosis osteoporosis 365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001883/ScoringFiles/PGS001883.txt.gz
PGS001882
(portability-PLR_740)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoarthrosis osteoarthritis 11,451
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001882/ScoringFiles/PGS001882.txt.gz
PGS001881
(portability-PLR_735.3)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hallux valgus (Bunion) Hallux valgus 4,527
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001881/ScoringFiles/PGS001881.txt.gz
PGS001880
(portability-PLR_728.71)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Contracture of palmar fascia [Dupuytren's disease] Dupuytren Contracture 2,443
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001880/ScoringFiles/PGS001880.txt.gz
PGS001879
(portability-PLR_727.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ganglion and cyst of synovium, tendon, and bursa ganglion or cyst of synovium/tendon/bursa 210
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001879/ScoringFiles/PGS001879.txt.gz
PGS001878
(portability-PLR_717)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Polymyalgia rheumatica polymyalgia rheumatica 142
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001878/ScoringFiles/PGS001878.txt.gz
PGS001877
(portability-PLR_716)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other arthropathies Arthropathy 17,363
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001877/ScoringFiles/PGS001877.txt.gz
PGS001876
(portability-PLR_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 85
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001876/ScoringFiles/PGS001876.txt.gz
PGS001875
(portability-PLR_714.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 256
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001875/ScoringFiles/PGS001875.txt.gz
PGS001874
(portability-PLR_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 563
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001874/ScoringFiles/PGS001874.txt.gz
PGS001873
(portability-PLR_704)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diseases of hair and hair follicles disorder of pilosebaceous unit 461
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001873/ScoringFiles/PGS001873.txt.gz
PGS001872
(portability-PLR_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001872/ScoringFiles/PGS001872.txt.gz
PGS001871
(portability-PLR_696.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Psoriasis psoriasis 264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001871/ScoringFiles/PGS001871.txt.gz
PGS001870
(portability-PLR_695.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lupus (localized and systemic) lupus erythematosus 87
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001870/ScoringFiles/PGS001870.txt.gz
PGS001869
(portability-PLR_681)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Superficial cellulitis and abscess cellulitis 131
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001869/ScoringFiles/PGS001869.txt.gz
PGS001868
(portability-PLR_654.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rhesus isoimmunization in pregnancy Rh isoimmunization 30
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001868/ScoringFiles/PGS001868.txt.gz
PGS001867
(portability-PLR_618)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Genital prolapse prolapse of female genital organ 9,708
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001867/ScoringFiles/PGS001867.txt.gz
PGS001866
(portability-PLR_615)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Endometriosis endometriosis 399
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001866/ScoringFiles/PGS001866.txt.gz
PGS001865
(portability-PLR_600)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hyperplasia of prostate benign prostatic hyperplasia 1,712
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001865/ScoringFiles/PGS001865.txt.gz
PGS001864
(portability-PLR_594)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urinary calculus urolithiasis 5,599
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001864/ScoringFiles/PGS001864.txt.gz
PGS001863
(portability-PLR_593)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hematuria Hematuria 794
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001863/ScoringFiles/PGS001863.txt.gz
PGS001862
(portability-PLR_575)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other biliary tract disease biliary tract disorder 151
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001862/ScoringFiles/PGS001862.txt.gz
PGS001861
(portability-PLR_574)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholelithiasis and cholecystitis Cholecystitis,
cholelithiasis		 2,059
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001861/ScoringFiles/PGS001861.txt.gz
PGS001860
(portability-PLR_571.5)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other chronic nonalcoholic liver disease liver disorder 497
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001860/ScoringFiles/PGS001860.txt.gz
PGS001859
(portability-PLR_565.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Anal and rectal polyp polyp of rectum,
anal polyp		 789
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001859/ScoringFiles/PGS001859.txt.gz
PGS001858
(portability-PLR_564)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Functional digestive disorders digestive system disorder 764
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001858/ScoringFiles/PGS001858.txt.gz
PGS001857
(portability-PLR_562.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diverticulosis Colonic diverticula 23,800
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001857/ScoringFiles/PGS001857.txt.gz
PGS001856
(portability-PLR_557.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Celiac disease celiac disease 1,661
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001856/ScoringFiles/PGS001856.txt.gz
PGS001855
(portability-PLR_555.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ulcerative colitis ulcerative colitis 1,505
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001855/ScoringFiles/PGS001855.txt.gz
Showing 5151 to 5200 of 6982 rows