Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000941
(GBE_HC868)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Iridocyclitis (time-to-event) Iridocyclitis 1
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000941/ScoringFiles/PGS000941.txt.gz
PGS000966
(GBE_HC26)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Iritis iritis 1
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000966/ScoringFiles/PGS000966.txt.gz
PGS001033
(GBE_HC624)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other coagulation defects (time-to-event) blood coagulation disease 1
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001033/ScoringFiles/PGS001033.txt.gz
PGS001388
(GBE_QT_FC10003476)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Difficulty not smoking for 1 day smoking behavior trait 1
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001388/ScoringFiles/PGS001388.txt.gz
PGS001766
(GBE_INI25685)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract corticospinal tract (L) neuroimaging measurement,
brain volume		 1
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001766/ScoringFiles/PGS001766.txt.gz
PGS018585
(TPMI_195_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cancer suspected or other cancer 1
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018585/ScoringFiles/PGS018585.txt.gz
PGS018600
(TPMI_198.6_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Secondary malignancy of bone secondary malignant neoplasm 1
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018600/ScoringFiles/PGS018600.txt.gz
PGS019532
(TPMI_610.1_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cystic mastopathy breast fibrocystic disease 1
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019532/ScoringFiles/PGS019532.txt.gz
PGS001023
(GBE_HC703)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Disorders of mineral metabolism (time-to-event) mineral metabolism disease 2
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001023/ScoringFiles/PGS001023.txt.gz
PGS001319
(GBE_HC708)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other metabolic disorders (time-to-event) metabolic disease 2
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001319/ScoringFiles/PGS001319.txt.gz
PGS002880
(ExPRSweb_CRP_28887542-GCST004941_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002880/ScoringFiles/PGS002880.txt.gz
PGS002881
(ExPRSweb_CRP_28887542-GCST004941_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002881/ScoringFiles/PGS002881.txt.gz
PGS003315
(ExPRSweb_CysC_eGFRcys-overall-IV-2GC_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate		 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003315/ScoringFiles/PGS003315.txt.gz
PGS003316
(ExPRSweb_CysC_eGFRcys-overall-IV-2GC_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate		 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003316/ScoringFiles/PGS003316.txt.gz
PGS003451
(PRS2_MZL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Marginal zone lymphoma marginal zone lymphoma 2
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003451/ScoringFiles/PGS003451.txt.gz
PGS003452
(PRS2_WM)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Waldenström macroglobulinemia Waldenstrom macroglobulinemia 2
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003452/ScoringFiles/PGS003452.txt.gz
PGS018480
(TPMI_151_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cancer of stomach gastric cancer 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018480/ScoringFiles/PGS018480.txt.gz
PGS018590
(TPMI_195.1_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Malignant neoplasm other neoplasm 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018590/ScoringFiles/PGS018590.txt.gz
PGS019453
(TPMI_586.2_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cyst of kidney acquired Simple Cyst of Kidney 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019453/ScoringFiles/PGS019453.txt.gz
PGS019547
(TPMI_613.7_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Other signs and symptoms in breast sign or symptom 2
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019547/ScoringFiles/PGS019547.txt.gz
PGS000737
(PRS_BrS)
 PGP000144 |
Tadros R et al. Eur Heart J (2019)
 Brugada syndrome Brugada syndrome 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000737/ScoringFiles/PGS000737.txt.gz
PGS000777
(PHS3_PDD)
 PGP000181 |
Liu G et al. Nat Genet (2021)
 Parkinson's disease dementia cognitive decline measurement,
Parkinson disease		 3
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000777/ScoringFiles/PGS000777.txt.gz
PGS000849
(T2D_Impaired_Lipids)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Type 2 diabetes (based on SNPs associated with impaired lipids) type 2 diabetes mellitus 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000849/ScoringFiles/PGS000849.txt.gz
PGS000856
(T2D_LiverLipids)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Type 2 diabetes (based on SNPs associated with liver lipids) type 2 diabetes mellitus 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000856/ScoringFiles/PGS000856.txt.gz
PGS000977
(GBE_BIN23067)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 MCV seropositivity for Merkel Cell Polyomavirus merkel cell virus seropositivity 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000977/ScoringFiles/PGS000977.txt.gz
PGS001311
(GBE_HC1211)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Seropositive rheumatoid arthritis (time-to-event) rheumatoid arthritis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001311/ScoringFiles/PGS001311.txt.gz
PGS001777
(3-SNP_cirr)
 PGP000258 |
Whitfield JB et al. J Hepatol (2021)
 Cirrhosis (alcohol related) alcoholic liver cirrhosis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001777/ScoringFiles/PGS001777.txt.gz
PGS002299
(PRS3_gastric)
 PGP000328 |
Choi J et al. Int J Cancer (2020)
 Gastric cancer gastric cancer 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002299/ScoringFiles/PGS002299.txt.gz
PGS000857
(T2D_Obesity)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Type 2 diabetes (based on SNPs associated with obesity) type 2 diabetes mellitus 4
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000857/ScoringFiles/PGS000857.txt.gz
PGS000865
(PRS-HFC)
 PGP000212 |
Dongiovanni P et al. J Intern Med (2017)
 Hepatic fat content liver fat measurement 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000865/ScoringFiles/PGS000865.txt.gz
PGS000866
(PRS-HFC_SOS)
 PGP000212 |
Dongiovanni P et al. J Intern Med (2017)
 Hepatic fat content liver fat measurement 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000866/ScoringFiles/PGS000866.txt.gz
PGS000878
(PRS4_PC)
 PGP000224 |
Oh JJ et al. Front Oncol (2020)
 Prostate cancer prostate carcinoma 4
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000878/ScoringFiles/PGS000878.txt.gz
PGS001369
(GBE_HC1090)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Acute appendicitis (time-to-event) appendicitis 4
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001369/ScoringFiles/PGS001369.txt.gz
PGS002256
(GRS4_GDM)
 PGP000282 |
Wu Q et al. Diabetol Metab Syndr (2022)
 Gestational diabetes mellitus in early pregnancy gestational diabetes 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002256/ScoringFiles/PGS002256.txt.gz
PGS002795
(PRS_longetivity)
 PGP000378 |
Schoepf IC et al. Clin Infect Dis (2021)
 Longevity (>90th survival percentile) life span determination trait 4
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002795/ScoringFiles/PGS002795.txt.gz
PGS002920
(ExPRSweb_Estradiol_30800-raw_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estradiol estradiol measurement 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002920/ScoringFiles/PGS002920.txt.gz
PGS018465
(TPMI_149_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cancer of larynx pharynx nasal cavities larynx cancer 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018465/ScoringFiles/PGS018465.txt.gz
PGS018834
(TPMI_277_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Other disorders of metabolism metabolic disease 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018834/ScoringFiles/PGS018834.txt.gz
PGS018926
(TPMI_292_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Neurological disorders nervous system disorder 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018926/ScoringFiles/PGS018926.txt.gz
PGS019016
(TPMI_362.2_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Degeneration of macula and posterior pole of retina degeneration of macula and posterior pole 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019016/ScoringFiles/PGS019016.txt.gz
PGS019757
(TPMI_790.6_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Other abnormal blood chemistry Abnormal circulating sodium concentration 4
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019757/ScoringFiles/PGS019757.txt.gz
PGS000343
(wGRS_PsA_HLA)
 PGP000111 |
Smith MP et al. J Psoriasis Psoriatic Arthritis (2020)
 Psoriatic arthritis psoriatic arthritis 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000343/ScoringFiles/PGS000343.txt.gz
PGS000470
(PRSWEB_PHECODE172.3_UKBB-SAIGE-HRC-X172.3_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Carcinoma in situ of skin skin carcinoma in situ 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000470/ScoringFiles/PGS000470.txt.gz
PGS000596
(PRSWEB_PHECODE187.2_20001-1045_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Malignant neoplasm of testis testicular cancer 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000596/ScoringFiles/PGS000596.txt.gz
PGS000624
(PRSWEB_PHECODE191.11_GWAS-Catalog-r2019-05-03-X191.11_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000624/ScoringFiles/PGS000624.txt.gz
PGS000633
(PRSWEB_PHECODE193_GWAS-Catalog-r2019-05-03-X193_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Thyroid cancer thyroid gland carcinoma 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000633/ScoringFiles/PGS000633.txt.gz
PGS000635
(PRSWEB_PHECODE193_UKBB-SAIGE-HRC-X193_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Thyroid cancer thyroid gland carcinoma 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000635/ScoringFiles/PGS000635.txt.gz
PGS000757
(GRS4_Nar)
 PGP000162 |
Ouyang H et al. Ann Transl Med (2020)
 Narcolepsy narcolepsy-cataplexy syndrome 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000757/ScoringFiles/PGS000757.txt.gz
PGS000781
(GRS7_Glio)
 PGP000185 |
Adel Fahmideh M et al. Sci Rep (2019)
 Glioma glioma,
brain neoplasm		 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000781/ScoringFiles/PGS000781.txt.gz
PGS000872
(PRS-5)
 PGP000215 |
Bianco C et al. J Hepatol (2020)
 Non-alcoholic fatty liver disease metabolic dysfunction-associated steatotic liver disease 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000872/ScoringFiles/PGS000872.txt.gz
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