Trait: serum urea measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009795
Description Quantification of the amount of urea in serum.
Trait category
Other measurement
Synonyms urea measurement
Mapped term(s) PMID:30808845

Associated Polygenic Score(s)

Polygenic Score (PGS) ID PGS Name PGS Publication (PGP) ID Reported Trait Mapped Trait(s) (Ontology) Number of Variants PGS Scoring File (FTP Link)
PGS000701 snpnet.Urea PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) Urea [mmol/L] serum urea measurement 12,351 http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000701/ScoringFiles/PGS000701.txt.gz - Check Terms/Licenses

PGS Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance Metric ID
(PPM ID)
Evaluated Score PGS Sample Set ID
(PSS ID)
Performance Source Trait PGS Effect Sizes
(per SD change)
PGS Classification Metrics Other Metrics Covariates Included in the Model PGS Performance: Other Relevant Information
PPM001569 PGS000701
(snpnet.Urea)
PSS000786 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Urea [mmol/L] : 0.15214
Spearman's ρ: 0.223
Age, sex, PCs(1-40)
PPM001534 PGS000701
(snpnet.Urea)
PSS000785 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Urea [mmol/L] : 0.15556
Spearman's ρ: 0.174
Age, sex, PCs(1-40)
PPM001499 PGS000701
(snpnet.Urea)
PSS000784 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Urea [mmol/L] : 0.15772
Spearman's ρ: 0.205
Age, sex, PCs(1-40)
PPM001464 PGS000701
(snpnet.Urea)
PSS000783 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Urea [mmol/L] : 0.12883
Spearman's ρ: 0.147
Age, sex, PCs(1-40)
PPM001429 PGS000701
(snpnet.Urea)
PSS000782 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Urea [mmol/L] : 0.13035
Spearman's ρ: 0.111
Age, sex, PCs(1-40)

Evaluated Samples

PGS Sample Set ID
(PSS ID)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000782 6,015 individuals African unspecified UKB
PSS000783 1,080 individuals East Asian UKB
PSS000784 23,562 individuals European Non-British White UKB
PSS000785 7,336 individuals South Asian UKB
PSS000786 63,745 individuals European
(British)
UKB