Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003030
(ExPRSweb_LDL_30780-irnt_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 LDL cholesterol low density lipoprotein cholesterol measurement 2,066
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003030/ScoringFiles/PGS003030.txt.gz
PGS001544
(GBE_INI25006)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter neuroimaging measurement,
grey matter volume measurement		 2,061
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001544/ScoringFiles/PGS001544.txt.gz
PGS002617
(bp_SYSTOLICadjMEDz.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Systolic blood pressure systolic blood pressure 2,060
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002617/ScoringFiles/PGS002617.txt.gz
PGS001861
(portability-PLR_574)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholelithiasis and cholecystitis Cholecystitis,
cholelithiasis		 2,059
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001861/ScoringFiles/PGS001861.txt.gz
PGS001636
(GBE_INI25016)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of putamen (R) neuroimaging measurement,
putamen volume		 2,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001636/ScoringFiles/PGS001636.txt.gz
PGS001670
(GBE_INI25661)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract forceps minor neuroimaging measurement,
brain volume		 2,047
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001670/ScoringFiles/PGS001670.txt.gz
PGS001571
(GBE_INI25828)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Intracalcarine Cortex (L) neuroimaging measurement,
grey matter volume measurement		 2,025
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001571/ScoringFiles/PGS001571.txt.gz
PGS001589
(GBE_INI25872)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Planum Temporale (L) neuroimaging measurement,
grey matter volume measurement		 2,019
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001589/ScoringFiles/PGS001589.txt.gz
PGS001651
(GBE_INI25499)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA FA in tract forceps minor neuroimaging measurement,
brain volume		 2,017
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001651/ScoringFiles/PGS001651.txt.gz
PGS001474
(GBE_INI25363)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in posterior limb of internal capsule on FA skeleton (L) neuroimaging measurement,
brain volume		 2,010
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001474/ScoringFiles/PGS001474.txt.gz
PGS001671
(GBE_INI25662)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract inferior fronto-occipital fasciculus (L) neuroimaging measurement,
brain volume		 2,008
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001671/ScoringFiles/PGS001671.txt.gz
PGS000364
(PRSWEB_PHECODE150_C15_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Esophageal cancer esophageal cancer 2,001
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000364/ScoringFiles/PGS000364.txt.gz
PGS004293
(GenoBoost_atrial_fibrillation_3)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Atrial fibrillation atrial fibrillation 2,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004293/ScoringFiles/PGS004293.txt.gz
PGS004294
(GenoBoost_atrial_fibrillation_4)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Atrial fibrillation atrial fibrillation 2,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004294/ScoringFiles/PGS004294.txt.gz
PGS001541
(GBE_INI25009)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of brain, grey+white matter (normalised for head size) neuroimaging measurement,
grey matter volume measurement,
white matter volume measurement		 1,999
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001541/ScoringFiles/PGS001541.txt.gz
PGS002582
(body_BALDING1.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Balding Type 1 balding measurement 1,998
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002582/ScoringFiles/PGS002582.txt.gz
PGS001595
(GBE_INI25834)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Subcallosal Cortex (L) neuroimaging measurement,
grey matter volume measurement		 1,978
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001595/ScoringFiles/PGS001595.txt.gz
PGS001488
(GBE_INI25385)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in superior longitudinal fasciculus on FA skeleton (L) neuroimaging measurement,
brain volume		 1,974
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001488/ScoringFiles/PGS001488.txt.gz
PGS001573
(GBE_INI25917)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in IX Cerebellum (R) neuroimaging measurement,
grey matter volume measurement		 1,972
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001573/ScoringFiles/PGS001573.txt.gz
PGS004190
(afib_5)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Atrial fibrillation atrial fibrillation 1,972
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004190/ScoringFiles/PGS004190.txt.gz
PGS001948
(portability-PLR_log_ECG_QRS_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QRS duration QRS duration 1,967
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001948/ScoringFiles/PGS001948.txt.gz
PGS001672
(GBE_INI25663)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract inferior fronto-occipital fasciculus (R) neuroimaging measurement,
brain volume		 1,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001672/ScoringFiles/PGS001672.txt.gz
PGS001907
(portability-PLR_ECG_RR_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 RR interval RR interval 1,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001907/ScoringFiles/PGS001907.txt.gz
PGS001475
(GBE_INI25362)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in posterior limb of internal capsule on FA skeleton (R) neuroimaging measurement,
brain volume		 1,957
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001475/ScoringFiles/PGS001475.txt.gz
PGS003294
(ExPRSweb_CysC_eGFRcys-overall-EA_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate		 1,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003294/ScoringFiles/PGS003294.txt.gz
PGS003309
(ExPRSweb_CysC_eGFRcys-overall-EA_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate		 1,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003309/ScoringFiles/PGS003309.txt.gz
PGS001448
(GBE_INI25102)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in tapetum on FA skeleton (R) neuroimaging measurement,
brain volume		 1,948
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001448/ScoringFiles/PGS001448.txt.gz
PGS000746
(PRS_UKB)
 PGP000152 |
Gola D et al. Circ Genom Precis Med (2020)
 Coronary artery disease coronary artery disorder 1,940
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000746/ScoringFiles/PGS000746.txt.gz
PGS003953
(AD_Bellenguez)
 PGP000503 |
Sofer T et al. Alzheimers Res Ther (2023)
 Alzheimer's disease Alzheimer disease 1,937
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003953/ScoringFiles/PGS003953.txt.gz
PGS001473
(GBE_INI25370)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in posterior corona radiata on FA skeleton (R) neuroimaging measurement,
brain volume		 1,934
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001473/ScoringFiles/PGS001473.txt.gz
PGS003599
(L_GC-ML-DG_head_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left granule cell and molecular layer of the dentate gyrus head volume dentate gyrus volume 1,931
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003599/ScoringFiles/PGS003599.txt.gz
PGS001457
(GBE_INI25379)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in cingulum cingulate gyrus on FA skeleton (L) neuroimaging measurement,
brain volume		 1,929
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001457/ScoringFiles/PGS001457.txt.gz
PGS003658
(R_hippocampus_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right hippocampus volume hippocampal volume 1,926
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003658/ScoringFiles/PGS003658.txt.gz
PGS001511
(GBE_INI25030)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Median T2star in putamen (L) neuroimaging measurement 1,922
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001511/ScoringFiles/PGS001511.txt.gz
PGS001633
(GBE_INI25002)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of peripheral cortical grey matter neuroimaging measurement,
grey matter volume measurement		 1,920
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001633/ScoringFiles/PGS001633.txt.gz
PGS001619
(GBE_INI25913)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Vermis VIIIb Cerebellum neuroimaging measurement,
grey matter volume measurement		 1,916
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001619/ScoringFiles/PGS001619.txt.gz
PGS001554
(GBE_INI25903)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Crus II Cerebellum (L) neuroimaging measurement,
grey matter volume measurement		 1,913
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001554/ScoringFiles/PGS001554.txt.gz
PGS001109
(GBE_HC1021)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vasomotor and allergic rhinitis (time-to-event) vasomotor rhinitis,
allergic rhinitis		 1,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001109/ScoringFiles/PGS001109.txt.gz
PGS001543
(GBE_INI25014)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of caudate (R) neuroimaging measurement,
caudate nucleus volume		 1,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001543/ScoringFiles/PGS001543.txt.gz
PGS001455
(GBE_INI25359)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in cerebral peduncle on FA skeleton (L) neuroimaging measurement,
brain volume		 1,907
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001455/ScoringFiles/PGS001455.txt.gz
PGS000948
(GBE_HC243)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Inguinal hernia Inguinal hernia 1,899
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000948/ScoringFiles/PGS000948.txt.gz
PGS003010
(ExPRSweb_Hypertension_finngen-R4-I9_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 1,894
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003010/ScoringFiles/PGS003010.txt.gz
PGS003688
(R_molecular_layer_HP_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right molecular layer hippocampus proper body volume hippocampus molecular layer volume 1,889
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003688/ScoringFiles/PGS003688.txt.gz
PGS003090
(ExPRSweb_T2D_2443_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,888
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003090/ScoringFiles/PGS003090.txt.gz
PGS001739
(GBE_INI25644)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L3 in tract superior longitudinal fasciculus (L) neuroimaging measurement,
brain volume		 1,884
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001739/ScoringFiles/PGS001739.txt.gz
PGS001433
(GBE_INI25084)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in posterior thalamic radiation on FA skeleton (R) neuroimaging measurement,
brain volume		 1,877
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001433/ScoringFiles/PGS001433.txt.gz
PGS001674
(GBE_INI25665)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract inferior longitudinal fasciculus (R) neuroimaging measurement,
brain volume		 1,872
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001674/ScoringFiles/PGS001674.txt.gz
PGS001540
(GBE_INI25010)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of brain, grey+white matter neuroimaging measurement,
grey matter volume measurement,
white matter volume measurement		 1,871
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001540/ScoringFiles/PGS001540.txt.gz
PGS018520
(TPMI_165.1_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cancer of bronchus lung bronchus cancer 1,869
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018520/ScoringFiles/PGS018520.txt.gz
PGS001440
(GBE_INI25068)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in superior cerebellar peduncle on FA skeleton (R) neuroimaging measurement,
brain volume		 1,860
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001440/ScoringFiles/PGS001440.txt.gz
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