Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002315
(bmd_HEEL_TSCOREz.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002315/ScoringFiles/PGS002315.txt.gz
PGS002387
(bmd_HEEL_TSCOREz.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 25,831
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002387/ScoringFiles/PGS002387.txt.gz
PGS002436
(bmd_HEEL_TSCOREz.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 53,472
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002436/ScoringFiles/PGS002436.txt.gz
PGS002485
(bmd_HEEL_TSCOREz.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 171,392
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002485/ScoringFiles/PGS002485.txt.gz
PGS002534
(bmd_HEEL_TSCOREz.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 11,440
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002534/ScoringFiles/PGS002534.txt.gz
PGS002583
(bmd_HEEL_TSCOREz.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 7,908
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002583/ScoringFiles/PGS002583.txt.gz
PGS002632
(bmd_HEEL_TSCOREz.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 432,286
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002632/ScoringFiles/PGS002632.txt.gz
PGS002681
(bmd_HEEL_TSCOREz.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Bone mineral density (BMD) bone tissue density 984,276
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002681/ScoringFiles/PGS002681.txt.gz
PGS000618
(PRSWEB_PHECODE191.1_GWAS-Catalog-r2019-05-03-X191.1_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain and nervous system cancer central nervous system cancer 23
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000618/ScoringFiles/PGS000618.txt.gz
PGS000619
(PRSWEB_PHECODE191.1_GWAS-Catalog-r2019-05-03-X191.1_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain and nervous system cancer central nervous system cancer 19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000619/ScoringFiles/PGS000619.txt.gz
PGS000620
(PRSWEB_PHECODE191.11_C71_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 522
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000620/ScoringFiles/PGS000620.txt.gz
PGS000621
(PRSWEB_PHECODE191.11_GWAS-Catalog-r2019-05-03-X191.11_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 12
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000621/ScoringFiles/PGS000621.txt.gz
PGS000622
(PRSWEB_PHECODE191.11_GWAS-Catalog-r2019-05-03-X191.11_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 12
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000622/ScoringFiles/PGS000622.txt.gz
PGS000623
(PRSWEB_PHECODE191.11_GWAS-Catalog-r2019-05-03-X191.11_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 11
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000623/ScoringFiles/PGS000623.txt.gz
PGS000624
(PRSWEB_PHECODE191.11_GWAS-Catalog-r2019-05-03-X191.11_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000624/ScoringFiles/PGS000624.txt.gz
PGS000625
(PRSWEB_PHECODE191.11_UKBB-SAIGE-HRC-X191.11_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 11
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000625/ScoringFiles/PGS000625.txt.gz
PGS001808
(portability-PLR_191.11)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Brain cancer brain cancer 117
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001808/ScoringFiles/PGS001808.txt.gz
PGS003737
(PRS26_BrC)
 PGP000470 |
Xin J et al. EBioMedicine (2023)
 Brain cancer brain neoplasm 26
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003737/ScoringFiles/PGS003737.txt.gz
PGS000978
(GBE_INI1438)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Bread intake carbohydrate intake measurement 3,483
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000978/ScoringFiles/PGS000978.txt.gz
PGS000001
(PRS77_BC)
 PGP000001 |
Mavaddat N et al. J Natl Cancer Inst (2015)
 Breast cancer breast carcinoma 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000001/ScoringFiles/PGS000001.txt.gz
PGS000004
(PRS313_BC)
 PGP000002 |
Mavaddat N et al. Am J Hum Genet (2018)
 Breast cancer breast carcinoma 313
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000004/ScoringFiles/PGS000004.txt.gz
PGS000007
(PRS3820_BC)
 PGP000002 |
Mavaddat N et al. Am J Hum Genet (2018)
 Breast cancer breast carcinoma 3,820
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000007/ScoringFiles/PGS000007.txt.gz
PGS000015
(GPS_BC)
 PGP000006 |
Khera AV et al. Nat Genet (2018)
 Breast cancer breast carcinoma 5,218
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000015/ScoringFiles/PGS000015.txt.gz - Check Terms/Licenses
PGS000028
(PRS)
 PGP000018 |
Shieh Y et al. Breast Cancer Res Treat (2016)
 Breast cancer breast carcinoma 83
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000028/ScoringFiles/PGS000028.txt.gz
PGS000029
(PRS_AS)
 PGP000018 |
Shieh Y et al. Breast Cancer Res Treat (2016)
 Breast cancer breast carcinoma 76
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000029/ScoringFiles/PGS000029.txt.gz
PGS000045
(BCPRS_Overall)
 PGP000033 |
Kuchenbaecker KB et al. J Natl Cancer Inst (2017)
 Breast cancer breast carcinoma 88
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000045/ScoringFiles/PGS000045.txt.gz
PGS000050
(PRS44)
 PGP000035 |
Wen W et al. Breast Cancer Res (2016)
 Breast cancer breast carcinoma 44
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000050/ScoringFiles/PGS000050.txt.gz
PGS000051
(PRS67)
 PGP000036 |
Zhang X et al. PLoS Med (2018)
 Breast cancer breast carcinoma 67
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000051/ScoringFiles/PGS000051.txt.gz
PGS000052
(sPRS161)
 PGP000037 |
Lakeman IMM et al. J Med Genet (2019)
 Breast cancer breast carcinoma 161
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000052/ScoringFiles/PGS000052.txt.gz
PGS000072
(CC_Breast)
 PGP000050 |
Graff RE et al. Nat Commun (2021)
 Breast cancer breast carcinoma 187
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000072/ScoringFiles/PGS000072.txt.gz
PGS000153
(cGRS_Breast)
 PGP000075 |
Shi Z et al. Cancer Med (2019)
 Breast cancer breast carcinoma 66
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000153/ScoringFiles/PGS000153.txt.gz
PGS000317
(PRS180)
 PGP000094 |
Shieh Y et al. J Natl Cancer Inst (2020)
 Breast cancer breast carcinoma 180
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000317/ScoringFiles/PGS000317.txt.gz
PGS000332
(PRS_BC)
 PGP000100 |
Mars N et al. Nat Med (2020)
 Breast cancer breast carcinoma 6,390,808
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000332/ScoringFiles/PGS000332.txt.gz
PGS000335
(BC_PRSCS)
 PGP000102 |
Mars N et al. Nat Commun (2020)
 Breast cancer breast carcinoma 1,079,089
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000335/ScoringFiles/PGS000335.txt.gz
PGS000344
(PRS287_BC)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Breast cancer breast carcinoma 287
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000344/ScoringFiles/PGS000344.txt.gz
PGS000345
(PRS229_BC)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Breast cancer breast carcinoma 229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000345/ScoringFiles/PGS000345.txt.gz
PGS000773
(PRS179_BC)
 PGP000179 |
Du Z et al. J Natl Cancer Inst (2021)
 Breast cancer breast carcinoma 179
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000773/ScoringFiles/PGS000773.txt.gz
PGS000783
(CC_Breast_IV)
 PGP000186 |
Kachuri L et al. Nat Commun (2020)
 Breast cancer breast carcinoma 162
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000783/ScoringFiles/PGS000783.txt.gz
PGS000873
(SNP143)
 PGP000216 |
Brentnall AR et al. Int J Cancer (2019)
 Breast cancer breast carcinoma 143
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000873/ScoringFiles/PGS000873.txt.gz
PGS001336
(GBE_cancer1002)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Breast cancer breast carcinoma 555
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001336/ScoringFiles/PGS001336.txt.gz
PGS001778
(PRS15_BC)
 PGP000259 |
Yiangou K et al. Cancers (Basel) (2021)
 Breast cancer breast carcinoma 15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001778/ScoringFiles/PGS001778.txt.gz
PGS002242
(ldpred_breastcancer)
 PGP000271 |
Mars N et al. Cell Genom (2022)
 Breast cancer breast carcinoma 6,494,889
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002242/ScoringFiles/PGS002242.txt.gz
PGS002294
(PRS111)
 PGP000324 |
Yang Y et al. JAMA Netw Open (2022)
 Breast cancer breast carcinoma 111
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002294/ScoringFiles/PGS002294.txt.gz
PGS003380
(best_BRCA)
 PGP000413 |
Namba S et al. Cancer Res (2022)
 Breast cancer breast carcinoma 1,142,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003380/ScoringFiles/PGS003380.txt.gz
PGS003396
(PRS-11ASN)
 PGP000415 |
Jee YH et al. Int J Epidemiol (2022)
 Breast cancer breast carcinoma 11
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003396/ScoringFiles/PGS003396.txt.gz
PGS003397
(PRS-42ASN)
 PGP000415 |
Jee YH et al. Int J Epidemiol (2022)
 Breast cancer breast carcinoma 42
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003397/ScoringFiles/PGS003397.txt.gz
PGS003398
(PRS-136EUR)
 PGP000415 |
Jee YH et al. Int J Epidemiol (2022)
 Breast cancer breast carcinoma 136
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003398/ScoringFiles/PGS003398.txt.gz
PGS003399
(PRS-209EUR)
 PGP000415 |
Jee YH et al. Int J Epidemiol (2022)
 Breast cancer breast carcinoma 209
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003399/ScoringFiles/PGS003399.txt.gz
PGS003738
(PRS136_BC)
 PGP000470 |
Xin J et al. EBioMedicine (2023)
 Breast cancer breast carcinoma 136
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003738/ScoringFiles/PGS003738.txt.gz
PGS003758
(BrCa_PRS_JPHC_JPGWAS)
 PGP000478 |
Ohbe H et al. Breast Cancer Res Treat (2022)
 Breast cancer breast carcinoma 46,861
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003758/ScoringFiles/PGS003758.txt.gz
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