Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004116
(pt_clump.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 58
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004116/ScoringFiles/PGS004116.txt.gz
PGS000822
(GRS_UACR)
 PGP000206 |
Teumer A et al. Nat Commun (2019)
 Urinary albumin to creatinine ratio urinary albumin to creatinine ratio 59
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000822/ScoringFiles/PGS000822.txt.gz
PGS003027
(ExPRSweb_Hypertension_finngen-R4-I9_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertension 59
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003027/ScoringFiles/PGS003027.txt.gz
PGS003856
(PRS59_HDL)
 PGP000493 |
Li J et al. JAMA Netw Open (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 59
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003856/ScoringFiles/PGS003856.txt.gz
PGS001649
(GBE_INI25497)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA FA in tract corticospinal tract (R) neuroimaging measurement,
brain volume		 60
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001649/ScoringFiles/PGS001649.txt.gz
PGS003345
(ALLGRS_FPG)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Fasting plasma glucose blood glucose amount 60
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003345/ScoringFiles/PGS003345.txt.gz
PGS003853
(PRS60_TC)
 PGP000493 |
Li J et al. JAMA Netw Open (2023)
 Total cholesterol total cholesterol measurement 60
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003853/ScoringFiles/PGS003853.txt.gz
PGS004906
(PRS60_TSH)
 PGP000639 |
Mulder TA et al. Eur J Endocrinol (2023)
 Thyroid stimulating hormone concentration Thyroid stimulating hormone level 60
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004906/ScoringFiles/PGS004906.txt.gz
PGS003386
(best_COADREAD)
 PGP000413 |
Namba S et al. Cancer Res (2022)
 Colorectal cancer colorectal carcinoma 61
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003386/ScoringFiles/PGS003386.txt.gz
PGS000031
(GRSt)
 PGP000020 |
Vassy JL et al. Diabetes (2014)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 62
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000031/ScoringFiles/PGS000031.txt.gz
PGS000121
(2018_BMD62_GRS.FN)
 PGP000056 |
Ho-Le TP et al. J Bone Miner Res (2016)
 Bone mineral density (BMD) bone tissue density 62
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000121/ScoringFiles/PGS000121.txt.gz
PGS000485
(PRSWEB_PHECODE174.1_GWAS-Catalog-r2019-05-03-X174.1_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 62
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000485/ScoringFiles/PGS000485.txt.gz
PGS000487
(PRSWEB_PHECODE174.1_GWAS-Catalog-r2019-05-03-X174.1_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 62
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000487/ScoringFiles/PGS000487.txt.gz
PGS002293
(PRS62_psoriasis)
 PGP000323 |
Shen M et al. J Am Acad Dermatol (2022)
 Psoriasis psoriasis 62
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002293/ScoringFiles/PGS002293.txt.gz
PGS000148
(CRC63)
 PGP000071 |
Jeon J et al. Gastroenterology (2018)
 Colorectal cancer colorectal cancer 63
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000148/ScoringFiles/PGS000148.txt.gz
PGS000437
(PRSWEB_PHECODE172.2_C44_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Other non-epithelial skin cancer skin cancer 63
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000437/ScoringFiles/PGS000437.txt.gz
PGS000843
(WHRadjBMI)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 WHR adjusted for BMI BMI-adjusted waist-hip ratio 63
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000843/ScoringFiles/PGS000843.txt.gz
PGS004596
(PRS64_CHD)
 PGP000576 |
Peng H et al. Nutrients (2023)
 Coronary heart disease coronary artery disease 64
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004596/ScoringFiles/PGS004596.txt.gz
PGS003339
(CVGRS_LDL)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 LDL cholesterol low density lipoprotein cholesterol measurement 65
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003339/ScoringFiles/PGS003339.txt.gz
PGS003340
(CVGRS_TG)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Triglyceride level triglyceride measurement 65
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003340/ScoringFiles/PGS003340.txt.gz
PGS004247
(PRS65_melanoma)
 PGP000542 |
Kim ES et al. NPJ Precis Oncol (2023)
 Melanoma cutaneous melanoma 65
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004247/ScoringFiles/PGS004247.txt.gz
PGS000044
(PrCa66)
 PGP000031 |
Pashayan N et al. Br J Cancer (2015)
 Prostate cancer prostate carcinoma 66
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000044/ScoringFiles/PGS000044.txt.gz
PGS000153
(cGRS_Breast)
 PGP000075 |
Shi Z et al. Cancer Med (2019)
 Breast cancer breast carcinoma 66
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000153/ScoringFiles/PGS000153.txt.gz
PGS000833
(T1D)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 66
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000833/ScoringFiles/PGS000833.txt.gz
PGS000891
(GLGC_2021_EAS_LDL_PRS_weights_PT)
 PGP000230 |
Graham SE et al. Nature (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 66
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000891/ScoringFiles/PGS000891.txt.gz
PGS001407
(GBE_INI23022)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 HTLV-1 gag antigen for Human T-Lymphotropic Virus 1 blood protein amount 66
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001407/ScoringFiles/PGS001407.txt.gz
PGS002528
(repro_NumberChildrenEverBorn_Pooled.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Number of children ever born number of children ever born measurement 66
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002528/ScoringFiles/PGS002528.txt.gz
PGS000051
(PRS67)
 PGP000036 |
Zhang X et al. PLoS Med (2018)
 Breast cancer breast carcinoma 67
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000051/ScoringFiles/PGS000051.txt.gz
PGS001810
(portability-PLR_200.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Polycythemia vera polycythemia vera 67
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001810/ScoringFiles/PGS001810.txt.gz
PGS002792
(PRS67_Pca)
 PGP000371 |
Ruan X et al. Prostate (2022)
 Prostate cancer prostate carcinoma 67
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002792/ScoringFiles/PGS002792.txt.gz
PGS002797
(GRS67_His)
 PGP000379 |
Shi Z et al. Eur Urol Open Sci (2022)
 Prostate cancer prostate carcinoma 67
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002797/ScoringFiles/PGS002797.txt.gz
PGS004243
(PRS67_colorectum)
 PGP000542 |
Kim ES et al. NPJ Precis Oncol (2023)
 Colorectal cancer colorectal carcinoma 67
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004243/ScoringFiles/PGS004243.txt.gz
PGS005208
(Melanoma_PRS)
 PGP000729 |
Gibson TM et al. Nat Med (2024)
 Melanoma melanoma 67
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005208/ScoringFiles/PGS005208.txt.gz
PGS000474
(PRSWEB_PHECODE174.1_20001-1002_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 68
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000474/ScoringFiles/PGS000474.txt.gz
PGS000768
(PRS_QT)
 PGP000175 |
Lahrouchi N et al. Circulation (2020)
 QT-interval QT interval 68
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000768/ScoringFiles/PGS000768.txt.gz
PGS001117
(GBE_BIN_FC10002986)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Started insulin within one year diagnosis of diabetes insulin use measurement 68
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001117/ScoringFiles/PGS001117.txt.gz
PGS002247
(Melanoma_PRS68)
 PGP000274 |
Steinberg J et al. Br J Dermatol (2021)
 Melanoma melanoma 68
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002247/ScoringFiles/PGS002247.txt.gz
PGS002282
(GRS68_NAFLD)
 PGP000312 |
Schnurr TM et al. Hepatol Commun (2022)
 Nonalcoholic fatty liver disease non-alcoholic fatty liver disease 68
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002282/ScoringFiles/PGS002282.txt.gz
PGS003337
(CVGRS_HbA1c)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 HbA1c HbA1c measurement 68
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003337/ScoringFiles/PGS003337.txt.gz
PGS003430
(GTG_Melanoma)
 PGP000437 |
Wong CK et al. Melanoma Res (2023)
 Melanoma melanoma 68
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003430/ScoringFiles/PGS003430.txt.gz - Check Terms/Licenses
PGS001014
(GBE_HC654)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other disorders of pancreatic internal secretion (time-to-event) pancreas disease 69
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001014/ScoringFiles/PGS001014.txt.gz
PGS001043
(GBE_HC55)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hyperthyroidism, thyrotoxicosis hyperthyroidism,
Thyrotoxicosis		 69
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001043/ScoringFiles/PGS001043.txt.gz
PGS001051
(GBE_HC96)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Polymyalgia rheumatica polymyalgia rheumatica 69
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001051/ScoringFiles/PGS001051.txt.gz
PGS001297
(GBE_HC337)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 69
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001297/ScoringFiles/PGS001297.txt.gz
PGS000349
(PRS70_CAD)
 PGP000114 |
Pechlivanis S et al. BMC Med Genet (2020)
 Coronary artery disease coronary artery disease 70
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000349/ScoringFiles/PGS000349.txt.gz
PGS004172
(t1d_2)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Type 1 diabetes type 1 diabetes mellitus 70
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004172/ScoringFiles/PGS004172.txt.gz
PGS004268
(GenoBoost_gout_3)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Gout gout 70
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004268/ScoringFiles/PGS004268.txt.gz
PGS004269
(GenoBoost_gout_4)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Gout gout 70
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004269/ScoringFiles/PGS004269.txt.gz
PGS004299
(GenoBoost_breast_cancer_4)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Breast cancer breast carcinoma 70
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004299/ScoringFiles/PGS004299.txt.gz
PGS004300
(GenoBoost_colorectal_cancer_0)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Colorectal cancer colorectal carcinoma 70
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004300/ScoringFiles/PGS004300.txt.gz
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