Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003486
(PRS_AE)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 Atopic eczema atopic eczema 71
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003486/ScoringFiles/PGS003486.txt.gz
PGS003779
(HDL_SAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 71
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003779/ScoringFiles/PGS003779.txt.gz
PGS005230
(PRS71_STROKE)
 PGP000736 |
Ma Y et al. Stroke (2023)
 Stroke stroke 71
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005230/ScoringFiles/PGS005230.txt.gz
PGS000348
(PRS_PrCa)
 PGP000113 |
Black MH et al. Prostate (2020)
 Prostate cancer prostate carcinoma 72
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000348/ScoringFiles/PGS000348.txt.gz - Check Terms/Licenses
PGS000447
(PRSWEB_PHECODE172.21_20001-1061_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Basal cell carcinoma basal cell carcinoma 72
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000447/ScoringFiles/PGS000447.txt.gz
PGS000881
(GRS72_PCa)
 PGP000227 |
Xu J et al. Prostate (2021)
 Prostate cancer prostate carcinoma 72
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000881/ScoringFiles/PGS000881.txt.gz
PGS001697
(GBE_INI25724)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ISOVF in tract posterior thalamic radiation (R) neuroimaging measurement,
brain volume		 72
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001697/ScoringFiles/PGS001697.txt.gz
PGS002737
(PRS72)
 PGP000344 |
Bafligil C et al. Genet Med (2022)
 Endometrial cancer endometrial carcinoma 72
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002737/ScoringFiles/PGS002737.txt.gz
PGS000367
(PRSWEB_PHECODE153_CRC-Huyghe_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Colorectal cancer colorectal cancer 74
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000367/ScoringFiles/PGS000367.txt.gz
PGS000368
(PRSWEB_PHECODE153_CRC-Huyghe_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Colorectal cancer colorectal cancer 74
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000368/ScoringFiles/PGS000368.txt.gz
PGS003346
(ALLGRS_HbA1c)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 HbA1c HbA1c measurement 74
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003346/ScoringFiles/PGS003346.txt.gz
PGS003393
(best_LUAD)
 PGP000413 |
Namba S et al. Cancer Res (2022)
 Lung adenocarcinoma lung adenocarcinoma 74
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003393/ScoringFiles/PGS003393.txt.gz
PGS004863
(PRS74_AD)
 PGP000609 |
Sleiman PM et al. Alzheimers Dement (2023)
 Alzheimer's disease Alzheimer disease 74
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004863/ScoringFiles/PGS004863.txt.gz
PGS000077
(CC_LL)
 PGP000050 |
Graff RE et al. Nat Commun (2021)
 Lymphocytic leukemia lymphoid leukemia 75
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000077/ScoringFiles/PGS000077.txt.gz
PGS000396
(PRSWEB_PHECODE165.1_UKBB-SAIGE-HRC-X165.1_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Lung and bronchus cancer tracheal cancer,
bronchus cancer,
lung cancer		 75
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000396/ScoringFiles/PGS000396.txt.gz
PGS000788
(CC_LL_IV)
 PGP000186 |
Kachuri L et al. Nat Commun (2020)
 Lymphocytic leukemia lymphoid leukemia 75
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000788/ScoringFiles/PGS000788.txt.gz
PGS000029
(PRS_AS)
 PGP000018 |
Shieh Y et al. Breast Cancer Res Treat (2016)
 Breast cancer breast carcinoma 76
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000029/ScoringFiles/PGS000029.txt.gz
PGS000055
(PRS_CRC)
 PGP000040 |
Schmit SL et al. J Natl Cancer Inst (2019)
 Colorectal cancer colorectal cancer 76
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000055/ScoringFiles/PGS000055.txt.gz
PGS000651
(PRSWEB_PHECODE204.12_UKBB-SAIGE-HRC-X204.12_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 76
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000651/ScoringFiles/PGS000651.txt.gz
PGS000895
(GLGC_2021_HIS_LDL_PRS_weights_PT)
 PGP000230 |
Graham SE et al. Nature (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 76
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000895/ScoringFiles/PGS000895.txt.gz
PGS003349
(ALLGRS_TG)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Triglyceride level triglyceride measurement 76
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003349/ScoringFiles/PGS003349.txt.gz
PGS004611
(RORP_PRS)
 PGP000590 |
Shieh Y et al. NPJ Precis Oncol (2023)
 Breast cancer breast carcinoma 76
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004611/ScoringFiles/PGS004611.txt.gz
PGS000001
(PRS77_BC)
 PGP000001 |
Mavaddat N et al. J Natl Cancer Inst (2015)
 Breast cancer breast carcinoma 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000001/ScoringFiles/PGS000001.txt.gz
PGS000002
(PRS77_ERpos)
 PGP000001 |
Mavaddat N et al. J Natl Cancer Inst (2015)
 ER-positive breast cancer estrogen-receptor positive breast cancer 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000002/ScoringFiles/PGS000002.txt.gz
PGS000003
(PRS77_ERneg)
 PGP000001 |
Mavaddat N et al. J Natl Cancer Inst (2015)
 ER-negative breast cancer estrogen-receptor negative breast cancer 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000003/ScoringFiles/PGS000003.txt.gz
PGS000314
(GRS77_CRP)
 PGP000092 |
Xie T et al. Circ Genom Precis Med (2020)
 C-reactive protein C-reactive protein measurement 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000314/ScoringFiles/PGS000314.txt.gz
PGS000441
(PRSWEB_PHECODE172.2_UKBB-SAIGE-HRC-X172.2_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Other non-epithelial skin cancer skin cancer 77
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000441/ScoringFiles/PGS000441.txt.gz
PGS001536
(GBE_HC1188)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vitiligo (time-to-event) Vitiligo 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001536/ScoringFiles/PGS001536.txt.gz
PGS002732
(GRS_77)
 PGP000341 |
Vujkovic M et al. Nat Genet (2022)
 Chronic elevation of alanine aminotransferase serum alanine aminotransferase amount 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002732/ScoringFiles/PGS002732.txt.gz
PGS004317
(GRS-noHLA)
 PGP000547 |
Bui A et al. Front Genet (2023)
 Psoriasis psoriasis 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004317/ScoringFiles/PGS004317.txt.gz
PGS000567
(PRSWEB_PHECODE185_20001-1044_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 78
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000567/ScoringFiles/PGS000567.txt.gz
PGS003348
(ALLGRS_LDL)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 LDL cholesterol low density lipoprotein cholesterol measurement 78
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003348/ScoringFiles/PGS003348.txt.gz
PGS003764
(PRS78_sleep duration)
 PGP000487 |
Scammell BH et al. Hum Mol Genet (2023)
 Sleep duration sleep duration trait 78
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003764/ScoringFiles/PGS003764.txt.gz
PGS004592
(PRS_KC)
 PGP000571 |
Liyanage UE et al. J Eur Acad Dermatol Venereol (2022)
 Keratinocyte cancer keratinocyte carcinoma 78
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004592/ScoringFiles/PGS004592.txt.gz
PGS000160
(cGRS_Prostate)
 PGP000075 |
Shi Z et al. Cancer Med (2019)
 Prostate cancer prostate carcinoma 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000160/ScoringFiles/PGS000160.txt.gz
PGS000488
(PRSWEB_PHECODE174.1_GWAS-Catalog-r2019-05-03-X174.1_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 79
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000488/ScoringFiles/PGS000488.txt.gz
PGS000960
(GBE_HC1236)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other systemic involvement of connective tissue (time-to-event) connective tissue disease 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000960/ScoringFiles/PGS000960.txt.gz
PGS001872
(portability-PLR_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001872/ScoringFiles/PGS001872.txt.gz
PGS003338
(CVGRS_HDL)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 HDL cholesterol high density lipoprotein cholesterol measurement 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003338/ScoringFiles/PGS003338.txt.gz
PGS000125
(Qi_T2D_2017)
 PGP000062 |
Qi Q et al. Diabetes (2017)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 80
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000125/ScoringFiles/PGS000125.txt.gz
PGS000300
(GRS80_HR)
 PGP000092 |
Xie T et al. Circ Genom Precis Med (2020)
 Heart rate heart rate 80
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000300/ScoringFiles/PGS000300.txt.gz
PGS000404
(PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Skin cancer skin carcinoma 80
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000404/ScoringFiles/PGS000404.txt.gz
PGS000591
(PRSWEB_PHECODE185_UKBB-SAIGE-HRC-X185_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 80
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000591/ScoringFiles/PGS000591.txt.gz
PGS003791
(LDL_EAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 80
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003791/ScoringFiles/PGS003791.txt.gz
PGS004265
(GenoBoost_gout_0)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Gout gout 80
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004265/ScoringFiles/PGS004265.txt.gz
PGS004296
(GenoBoost_breast_cancer_1)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Breast cancer breast carcinoma 80
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004296/ScoringFiles/PGS004296.txt.gz
PGS004589
(PRS80_trans)
 PGP000567 |
Jung SH et al. JAMA Netw Open (2022)
 Alzheimer's disease Alzheimer disease 80
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004589/ScoringFiles/PGS004589.txt.gz
PGS000369
(PRSWEB_PHECODE153_CRC-Huyghe_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Colorectal cancer colorectal cancer 81
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000369/ScoringFiles/PGS000369.txt.gz
PGS003739
(PRS81_CoC)
 PGP000470 |
Xin J et al. EBioMedicine (2023)
 Colorectal cancer colorectal carcinoma 81
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003739/ScoringFiles/PGS003739.txt.gz
PGS003954
(AD_FINNGEN)
 PGP000503 |
Sofer T et al. Alzheimers Res Ther (2023)
 Alzheimer's disease Alzheimer disease 81
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003954/ScoringFiles/PGS003954.txt.gz
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