Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004671
(TC_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004671/ScoringFiles/PGS004671.txt.gz
PGS004676
(TC_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004676/ScoringFiles/PGS004676.txt.gz
PGS004681
(TC_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004681/ScoringFiles/PGS004681.txt.gz
PGS004626
(HDL_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004626/ScoringFiles/PGS004626.txt.gz
PGS004631
(HDL_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004631/ScoringFiles/PGS004631.txt.gz
PGS004636
(HDL_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004636/ScoringFiles/PGS004636.txt.gz
PGS002977
(ExPRSweb_Height_GIANT-Yang2012-height_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Height body height 1,851,736
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002977/ScoringFiles/PGS002977.txt.gz
PGS004790
(hypothyroid_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hypothyroidism hypothyroidism 1,841,655
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004790/ScoringFiles/PGS004790.txt.gz
PGS004639
(LDL_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,794,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004639/ScoringFiles/PGS004639.txt.gz
PGS004649
(LDL_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,794,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004649/ScoringFiles/PGS004649.txt.gz
PGS004813
(Platelets_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Platelet count platelet count 1,793,041
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004813/ScoringFiles/PGS004813.txt.gz
PGS004654
(logTG_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,775,011
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004654/ScoringFiles/PGS004654.txt.gz
PGS004664
(logTG_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,775,011
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004664/ScoringFiles/PGS004664.txt.gz
PGS000907
(PRS_MDD)
 PGP000238 |
Campos AI et al. Commun Med (Lond) (2021)
 Major depressive disorder major depressive disorder 1,773,528
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000907/ScoringFiles/PGS000907.txt.gz
PGS000018
(metaGRS_CAD)
 PGP000007 |
Inouye M et al. J Am Coll Cardiol (2018)
 Coronary artery disease coronary artery disease 1,745,179
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000018/ScoringFiles/PGS000018.txt.gz
PGS004629
(HDL_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,731,178
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004629/ScoringFiles/PGS004629.txt.gz
PGS004634
(HDL_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,731,178
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004634/ScoringFiles/PGS004634.txt.gz
PGS004669
(TC_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,728,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004669/ScoringFiles/PGS004669.txt.gz
PGS004674
(TC_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,728,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004674/ScoringFiles/PGS004674.txt.gz
PGS004679
(TC_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,728,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004679/ScoringFiles/PGS004679.txt.gz
PGS005222
(F1_Frailty)
 PGP000735 |
Foote IF et al. Nat Genet (2025)
 Factor 1 (social isolation) of frailty frailty measurement 1,727,299
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005222/ScoringFiles/PGS005222.txt.gz
PGS005227
(F6_Frailty)
 PGP000735 |
Foote IF et al. Nat Genet (2025)
 Factor 6 (disability) of frailty frailty measurement 1,726,064
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005227/ScoringFiles/PGS005227.txt.gz
PGS004659
(logTG_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,722,077
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004659/ScoringFiles/PGS004659.txt.gz
PGS005223
(F2_Frailty)
 PGP000735 |
Foote IF et al. Nat Genet (2025)
 Factor 2 (unhealthy lifestyle) of frailty frailty measurement 1,719,220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005223/ScoringFiles/PGS005223.txt.gz
PGS005226
(F5_Frailty)
 PGP000735 |
Foote IF et al. Nat Genet (2025)
 Factor 5 (poorer cognition) of frailty frailty measurement 1,715,891
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005226/ScoringFiles/PGS005226.txt.gz
PGS001800
(PRS_FEV1)
 PGP000264 |
Moll M et al. Lancet Respir Med (2020)
 Forced expiratory volume (FEV1) forced expiratory volume 1,713,430
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001800/ScoringFiles/PGS001800.txt.gz
PGS004712
(ALP_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alkaline phosphatase alkaline phosphatase measurement 1,704,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004712/ScoringFiles/PGS004712.txt.gz
PGS004714
(ALP_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alkaline phosphatase alkaline phosphatase measurement 1,704,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004714/ScoringFiles/PGS004714.txt.gz
PGS004764
(Eosinophils_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Eosinophil count eosinophil count 1,698,846
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004764/ScoringFiles/PGS004764.txt.gz
PGS004668
(TC_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,691,065
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004668/ScoringFiles/PGS004668.txt.gz
PGS004624
(HDL_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,688,569
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004624/ScoringFiles/PGS004624.txt.gz
PGS003821
(TC_AFR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,687,775
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003821/ScoringFiles/PGS003821.txt.gz
PGS003822
(TC_AFR_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,687,775
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003822/ScoringFiles/PGS003822.txt.gz
PGS004638
(LDL_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,683,941
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004638/ScoringFiles/PGS004638.txt.gz
PGS004623
(HDL_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,683,003
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004623/ScoringFiles/PGS004623.txt.gz
PGS004653
(logTG_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,682,390
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004653/ScoringFiles/PGS004653.txt.gz
PGS003787
(LDL_AFR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,679,610
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003787/ScoringFiles/PGS003787.txt.gz
PGS003788
(LDL_AFR_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,679,610
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003788/ScoringFiles/PGS003788.txt.gz
PGS003804
(logTG_AFR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,678,784
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003804/ScoringFiles/PGS003804.txt.gz
PGS003805
(logTG_AFR_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,678,784
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003805/ScoringFiles/PGS003805.txt.gz
PGS003770
(HDL_AFR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,678,653
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003770/ScoringFiles/PGS003770.txt.gz
PGS003771
(HDL_AFR_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,678,653
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003771/ScoringFiles/PGS003771.txt.gz
PGS002877
(ExPRSweb_CRP_prot-a-670_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 1,662,602
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002877/ScoringFiles/PGS002877.txt.gz
PGS002987
(ExPRSweb_Height_GIANT-Yang2012-height_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Height body height 1,661,426
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002987/ScoringFiles/PGS002987.txt.gz
PGS004782
(height_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Height body height 1,612,712
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004782/ScoringFiles/PGS004782.txt.gz
PGS005224
(F3_Frailty)
 PGP000735 |
Foote IF et al. Nat Genet (2025)
 Factor 3 (multimorbidity) of frailty frailty measurement 1,588,232
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005224/ScoringFiles/PGS005224.txt.gz
PGS004768
(gout_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Gout gout 1,580,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004768/ScoringFiles/PGS004768.txt.gz
PGS004824
(RBC_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red blood cell count erythrocyte count 1,542,933
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004824/ScoringFiles/PGS004824.txt.gz
PGS004729
(Basophils_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Basophil count basophil count 1,538,675
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004729/ScoringFiles/PGS004729.txt.gz
PGS004759
(depression_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Depression major depressive disorder 1,538,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004759/ScoringFiles/PGS004759.txt.gz
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