Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001468
(GBE_INI25354)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in inferior cerebellar peduncle on FA skeleton (R) neuroimaging measurement,
brain volume		 1,262
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001468/ScoringFiles/PGS001468.txt.gz
PGS001650
(GBE_INI25498)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA FA in tract forceps major neuroimaging measurement,
brain volume		 1,261
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001650/ScoringFiles/PGS001650.txt.gz
PGS001584
(GBE_INI25849)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Parahippocampal Gyrus, anterior division (R) neuroimaging measurement,
grey matter volume measurement		 1,250
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001584/ScoringFiles/PGS001584.txt.gz
PGS001572
(GBE_INI25915)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in IX Cerebellum (L) neuroimaging measurement,
grey matter volume measurement		 1,245
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001572/ScoringFiles/PGS001572.txt.gz
PGS001442
(GBE_INI25080)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in superior corona radiata on FA skeleton (R) neuroimaging measurement,
brain volume		 1,238
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001442/ScoringFiles/PGS001442.txt.gz
PGS002595
(lung_FVCzSMOKE.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Forced vital capacity vital capacity 1,235
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002595/ScoringFiles/PGS002595.txt.gz
PGS001420
(GBE_INI25090)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in cingulum cingulate gyrus on FA skeleton (R) neuroimaging measurement,
brain volume		 1,224
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001420/ScoringFiles/PGS001420.txt.gz
PGS001338
(GBE_HC1322)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hyperplasia of prostate (time-to-event) benign prostatic hyperplasia 1,223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001338/ScoringFiles/PGS001338.txt.gz
PGS002535
(disease_CARDIOVASCULAR.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Cardiovascular disease cardiovascular disorder 1,218
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002535/ScoringFiles/PGS002535.txt.gz
PGS001302
(GBE_HC25)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cataract cataract 1,214
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001302/ScoringFiles/PGS001302.txt.gz
PGS003215
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea syndrome 1,209
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003215/ScoringFiles/PGS003215.txt.gz
PGS001447
(GBE_INI25103)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in tapetum on FA skeleton (L) neuroimaging measurement,
brain volume		 1,202
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001447/ScoringFiles/PGS001447.txt.gz
PGS001606
(GBE_INI25796)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Temporal Pole (L) neuroimaging measurement,
grey matter volume measurement		 1,200
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001606/ScoringFiles/PGS001606.txt.gz
PGS001539
(GBE_INI25025)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of brain stem + 4th ventricle neuroimaging measurement,
brain stem volume,
fourth ventricle volume		 1,183
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001539/ScoringFiles/PGS001539.txt.gz
PGS002623
(biochemistry_VitaminD.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Vitamin D vitamin D level 1,183
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002623/ScoringFiles/PGS002623.txt.gz
PGS001425
(GBE_INI25094)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in fornix cres+stria terminalis on FA skeleton (R) neuroimaging measurement,
brain volume		 1,174
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001425/ScoringFiles/PGS001425.txt.gz
PGS000035
(PRS_AF)
 PGP000022 |
Weng LC et al. Circulation (2017)
 Atrial fibrillation atrial fibrillation 1,168
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000035/ScoringFiles/PGS000035.txt.gz
PGS001409
(GBE_INI5262)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Intra-ocular pressure, corneal-compensated (L) intraocular pressure measurement 1,166
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001409/ScoringFiles/PGS001409.txt.gz
PGS001684
(GBE_INI25673)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract superior thalamic radiation (L) neuroimaging measurement,
brain volume		 1,165
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001684/ScoringFiles/PGS001684.txt.gz
PGS001434
(GBE_INI25077)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in retrolenticular part of internal capsule on FA skeleton (L) neuroimaging measurement,
brain volume		 1,164
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001434/ScoringFiles/PGS001434.txt.gz
PGS001749
(GBE_INI25526)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MD in tract forceps minor neuroimaging measurement,
brain volume		 1,164
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001749/ScoringFiles/PGS001749.txt.gz
PGS000697
(snpnet.Total_bilirubin)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Total bilirubin [umol/L] bilirubin measurement 1,159
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000697/ScoringFiles/PGS000697.txt.gz - Check Terms/Licenses
PGS001574
(GBE_INI25827)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Lateral Occipital Cortex, inferior division (R) neuroimaging measurement,
grey matter volume measurement		 1,159
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001574/ScoringFiles/PGS001574.txt.gz
PGS001459
(GBE_INI25381)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in cingulum hippocampus on FA skeleton (L) neuroimaging measurement,
brain volume		 1,153
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001459/ScoringFiles/PGS001459.txt.gz
PGS001694
(GBE_INI25717)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ISOVF in tract inferior fronto-occipital fasciculus (R) neuroimaging measurement,
brain volume		 1,146
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001694/ScoringFiles/PGS001694.txt.gz
PGS000961
(GBE_HC987)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Phlebitis and thrombophlebitis (time-to-event) Thrombophlebitis,
phlebitis		 1,143
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000961/ScoringFiles/PGS000961.txt.gz
PGS000501
(PRSWEB_PHECODE174.1_Onco-iCOGS-ER-positive-BRCA_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 1,142
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000501/ScoringFiles/PGS000501.txt.gz
PGS000982
(GBE_BIN_FC10002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun / ultraviolet protection (never / rarely) sun exposure measurement 1,141
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000982/ScoringFiles/PGS000982.txt.gz
PGS001429
(GBE_INI25056)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in middle cerebellar peduncle on FA skeleton neuroimaging measurement,
brain volume		 1,140
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001429/ScoringFiles/PGS001429.txt.gz
PGS001545
(GBE_INI25005)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter (normalised for head size) neuroimaging measurement,
grey matter volume measurement		 1,139
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001545/ScoringFiles/PGS001545.txt.gz
PGS000193
(MDD_0.001_Coleman_2020)
 PGP000080 |
Coleman JRI et al. Mol Psychiatry (2020)
 Major depression major depressive disorder 1,138
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000193/ScoringFiles/PGS000193.txt.gz
PGS004931
(gout_snpnet_combined)
 PGP000665 |
Moreno-Grau S et al. Human Genomics (2024)
 Gout gout 1,138
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004931/ScoringFiles/PGS004931.txt.gz
PGS002538
(cov_EDU_COLLEGE.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 College education educational attainment 1,136
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002538/ScoringFiles/PGS002538.txt.gz
PGS000609
(PRSWEB_PHECODE189.2_C67_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Bladder cancer urinary bladder carcinoma 1,130
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000609/ScoringFiles/PGS000609.txt.gz
PGS001667
(GBE_INI25658)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract corticospinal tract (L) neuroimaging measurement,
brain volume		 1,128
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001667/ScoringFiles/PGS001667.txt.gz
PGS004609
(adult_BMI)
 PGP000585 |
Hawkes G et al. Diabetologia (2023)
 Body mass index (BMI) body mass index 1,127
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004609/ScoringFiles/PGS004609.txt.gz
PGS001549
(GBE_INI25865)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Central Opercular Cortex (R) neuroimaging measurement,
grey matter volume measurement		 1,123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001549/ScoringFiles/PGS001549.txt.gz
PGS001695
(GBE_INI25718)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ISOVF in tract inferior longitudinal fasciculus (L) neuroimaging measurement,
brain volume		 1,123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001695/ScoringFiles/PGS001695.txt.gz
PGS001585
(GBE_INI25850)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Parahippocampal Gyrus, posterior division (L) neuroimaging measurement,
grey matter volume measurement		 1,120
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001585/ScoringFiles/PGS001585.txt.gz
PGS001490
(GBE_INI25391)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in tapetum on FA skeleton (L) neuroimaging measurement,
brain volume		 1,117
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001490/ScoringFiles/PGS001490.txt.gz
PGS005251
(iPRS)
 PGP000744 |
Olowofela AS et al. JCO Precis Oncol (2025)
 INFLA-Score platelet count,
C-reactive protein measurement,
neutrophil-to-lymphocyte ratio,
leukocyte quantity		 1,113
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005251/ScoringFiles/PGS005251.txt.gz
PGS001634
(GBE_INI25001)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of peripheral cortical grey matter (normalised for head size) neuroimaging measurement,
grey matter volume measurement		 1,112
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001634/ScoringFiles/PGS001634.txt.gz
PGS001314
(GBE_HC938)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Acute myocardial infarction (time-to-event) myocardial infarction 1,108
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001314/ScoringFiles/PGS001314.txt.gz
PGS002542
(disease_ALLERGY_ECZEMA_DIAGNOSED.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 1,104
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002542/ScoringFiles/PGS002542.txt.gz
PGS001321
(GBE_BIN_FC2006148)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Eye problems/disorders (Glaucoma) glaucoma 1,103
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001321/ScoringFiles/PGS001321.txt.gz
PGS000972
(GBE_BIN10030500)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Microalbumin [> 40 mg/L] urinary microalbumin measurement 1,097
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000972/ScoringFiles/PGS000972.txt.gz
PGS001665
(GBE_INI25654)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract cingulate gyrus part of cingulum (L) neuroimaging measurement,
brain volume		 1,095
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001665/ScoringFiles/PGS001665.txt.gz
PGS001061
(GBE_INI1289)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cooked vegetable consumption diet measurement 1,085
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001061/ScoringFiles/PGS001061.txt.gz
PGS001693
(GBE_INI25716)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ISOVF in tract inferior fronto-occipital fasciculus (L) neuroimaging measurement,
brain volume		 1,080
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001693/ScoringFiles/PGS001693.txt.gz
PGS001733
(GBE_INI25628)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L3 in tract cingulate gyrus part of cingulum (R) neuroimaging measurement,
brain volume		 1,080
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001733/ScoringFiles/PGS001733.txt.gz
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