Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004385
(X23111.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Leg fat percentage (right) body fat percentage 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004385/ScoringFiles/PGS004385.txt.gz
PGS004392
(X23118.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Leg predicted mass (left) body weights and measures 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004392/ScoringFiles/PGS004392.txt.gz
PGS004388
(X23114.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Leg predicted mass (right) body weights and measures 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004388/ScoringFiles/PGS004388.txt.gz
PGS001913
(portability-PLR_F_length_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 339
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001913/ScoringFiles/PGS001913.txt.gz
PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 414,081
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002128/ScoringFiles/PGS002128.txt.gz
PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 491,888
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002129/ScoringFiles/PGS002129.txt.gz
PGS003506
(cont-decay-F_length_menstrual_cycle)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Length of menstrual cycle menstrual cycle attribute 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003506/ScoringFiles/PGS003506.txt.gz
PGS000259
(LEP)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Leptin (LEP) serum levels blood protein amount 552,110
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000259/ScoringFiles/PGS000259.txt.gz
PGS000138
(LifetimeMDD)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Lifetime Major Depressive Disorder major depressive disorder 22,274
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000138/ScoringFiles/PGS000138.txt.gz
PGS000139
(MDDRecur)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Lifetime Major Depressive Disorder (with recurrence) recurrent,
major depressive disorder		 21,980
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000139/ScoringFiles/PGS000139.txt.gz
PGS001139
(GBE_BIN_FC10002644)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Light smokers, at least 100 smokes in lifetime smoking behavior trait 11
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001139/ScoringFiles/PGS001139.txt.gz
PGS005320
(LPA_PRS)
 PGP000766 |
Türkmen D et al. Pharmacogenomics J (2024)
 Lipoprotein (a) lipoprotein A measurement 36
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005320/ScoringFiles/PGS005320.txt.gz
PGS000313
(GRS49_Lp(a))
 PGP000092 |
Xie T et al. Circ Genom Precis Med (2020)
 Lipoprotein A lipoprotein A measurement 49
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000313/ScoringFiles/PGS000313.txt.gz
PGS000667
(LPA_GRS43)
 PGP000127 |
Trinder M et al. JAMA Cardiol (2020)
 Lipoprotein A lipoprotein A measurement 43
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000667/ScoringFiles/PGS000667.txt.gz
PGS001963
(portability-PLR_log_lipoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lipoprotein A lipoprotein A measurement 7,887
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001963/ScoringFiles/PGS001963.txt.gz
PGS002181
(portability-ldpred2_log_lipoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lipoprotein A lipoprotein A measurement 31,355
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002181/ScoringFiles/PGS002181.txt.gz
PGS003542
(cont-decay-log_lipoA)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Lipoprotein A lipoprotein A measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003542/ScoringFiles/PGS003542.txt.gz
PGS004201
(lpa_1)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Lipoprotein A lipoprotein A measurement 8,725
-
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004201/ScoringFiles/PGS004201.txt.gz
PGS004202
(lpa_2)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Lipoprotein A lipoprotein A measurement 8,714
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004202/ScoringFiles/PGS004202.txt.gz
PGS004203
(lpa_3)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Lipoprotein A lipoprotein A measurement 6,935
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004203/ScoringFiles/PGS004203.txt.gz
PGS004204
(lpa_4)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Lipoprotein A lipoprotein A measurement 6,927
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004204/ScoringFiles/PGS004204.txt.gz
PGS004205
(lpa_5)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Lipoprotein A lipoprotein A measurement 8,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004205/ScoringFiles/PGS004205.txt.gz
PGS000752
(PGS_Lpa)
 PGP000157 |
Dron JS et al. Circ Genom Precis Med (2021)
 Lipoprotein A concentration [nmol/L] lipoprotein A measurement 11,446
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000752/ScoringFiles/PGS000752.txt.gz
PGS002297
(GRS48_lpa)
 PGP000327 |
Coassin S et al. Circ Genom Precis Med (2022)
 Lipoprotein A levels lipoprotein A measurement 48
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002297/ScoringFiles/PGS002297.txt.gz
PGS000689
(snpnet.Lipoprotein_A)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Lipoprotein A [nmol/L] lipoprotein A measurement 8,308
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000689/ScoringFiles/PGS000689.txt.gz - Check Terms/Licenses
PGS002245
(PGS8_LF)
 PGP000273 |
Haas ME et al. Cell Genom (2021)
 Liver fat (MRI-derived) liver fat measurement 8
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002245/ScoringFiles/PGS002245.txt.gz
PGS001985
(portability-PLR_logMAR)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 logMAR in round (left/right) visual acuity measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001985/ScoringFiles/PGS001985.txt.gz
PGS003801
(logTG_EUR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 33,687
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003801/ScoringFiles/PGS003801.txt.gz
PGS003802
(logTG_EUR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,492,288
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003802/ScoringFiles/PGS003802.txt.gz
PGS003803
(logTG_AFR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 116
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003803/ScoringFiles/PGS003803.txt.gz
PGS003804
(logTG_AFR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,678,784
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003804/ScoringFiles/PGS003804.txt.gz
PGS003805
(logTG_AFR_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,678,784
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003805/ScoringFiles/PGS003805.txt.gz
PGS003806
(logTG_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003806/ScoringFiles/PGS003806.txt.gz
PGS003807
(logTG_AFR_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,106,476
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003807/ScoringFiles/PGS003807.txt.gz
PGS003808
(logTG_EAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 109
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003808/ScoringFiles/PGS003808.txt.gz
PGS003809
(logTG_EAS_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,189,464
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003809/ScoringFiles/PGS003809.txt.gz
PGS003810
(logTG_EAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,189,464
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003810/ScoringFiles/PGS003810.txt.gz
PGS003811
(logTG_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003811/ScoringFiles/PGS003811.txt.gz
PGS003812
(logTG_EAS_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 563,207
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003812/ScoringFiles/PGS003812.txt.gz
PGS003813
(logTG_SAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003813/ScoringFiles/PGS003813.txt.gz
PGS003814
(logTG_SAS_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,507,338
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003814/ScoringFiles/PGS003814.txt.gz
PGS003815
(logTG_SAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,507,338
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003815/ScoringFiles/PGS003815.txt.gz
PGS003816
(logTG_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003816/ScoringFiles/PGS003816.txt.gz
PGS003817
(logTG_SAS_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 798,330
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003817/ScoringFiles/PGS003817.txt.gz
PGS004652
(logTG_AFR_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 446
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004652/ScoringFiles/PGS004652.txt.gz
PGS004653
(logTG_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,682,390
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004653/ScoringFiles/PGS004653.txt.gz
PGS004654
(logTG_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,775,011
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004654/ScoringFiles/PGS004654.txt.gz
PGS004655
(logTG_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004655/ScoringFiles/PGS004655.txt.gz
PGS004656
(logTG_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004656/ScoringFiles/PGS004656.txt.gz
PGS004657
(logTG_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 221
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004657/ScoringFiles/PGS004657.txt.gz
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