Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001070
(GBE_INI25003)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of ventricular cerebrospinal fluid (normalised for head size) cerebrospinal fluid amount 880
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001070/ScoringFiles/PGS001070.txt.gz
PGS001248
(GBE_HC328)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Gout gout 880
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001248/ScoringFiles/PGS001248.txt.gz
PGS001422
(GBE_INI25092)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in cingulum hippocampus on FA skeleton (R) neuroimaging measurement,
brain volume		 879
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001422/ScoringFiles/PGS001422.txt.gz
PGS001256
(GBE_HC188)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Gallstones gallstones 876
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001256/ScoringFiles/PGS001256.txt.gz
PGS001757
(GBE_INI25540)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MD in tract uncinate fasciculus (L) neuroimaging measurement,
brain volume		 872
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001757/ScoringFiles/PGS001757.txt.gz
PGS001452
(GBE_INI25361)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ICVF in anterior limb of internal capsule on FA skeleton (L) neuroimaging measurement,
brain volume		 870
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001452/ScoringFiles/PGS001452.txt.gz
PGS001736
(GBE_INI25636)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L3 in tract inferior fronto-occipital fasciculus (R) neuroimaging measurement,
brain volume		 864
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001736/ScoringFiles/PGS001736.txt.gz
PGS001394
(GBE_INI20414)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Freq. of drinking alcohol alcohol consumption quality 860
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001394/ScoringFiles/PGS001394.txt.gz
PGS002739
(PRS_gene)
 PGP000346 |
Lai D et al. Transl Psychiatry (2022)
 Alcohol use disorder alcohol dependence 858
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002739/ScoringFiles/PGS002739.txt.gz
PGS001740
(GBE_INI25646)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L3 in tract superior thalamic radiation (L) neuroimaging measurement,
brain volume		 855
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001740/ScoringFiles/PGS001740.txt.gz
PGS001379
(GBE_INI22427)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Body surface area anthropometric measurement 850
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001379/ScoringFiles/PGS001379.txt.gz
PGS001376
(GBE_INI21044)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Average number of times bowels opened per day bowel opening frequency 845
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001376/ScoringFiles/PGS001376.txt.gz
PGS002547
(biochemistry_Glucose.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Glucose glucose measurement 840
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002547/ScoringFiles/PGS002547.txt.gz
PGS001264
(GBE_HC166)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Deep vein thrombosis deep vein thrombosis 839
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001264/ScoringFiles/PGS001264.txt.gz
PGS001614
(GBE_INI25904)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Vermis Crus II Cerebellum neuroimaging measurement,
grey matter volume measurement		 837
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001614/ScoringFiles/PGS001614.txt.gz
PGS001687
(GBE_INI25676)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract uncinate fasciculus (R) neuroimaging measurement,
brain volume		 837
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001687/ScoringFiles/PGS001687.txt.gz
PGS002871
(ExPRSweb_CRP_30710-raw_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 837
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002871/ScoringFiles/PGS002871.txt.gz
PGS001426
(GBE_INI25061)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in fornix on FA skeleton neuroimaging measurement,
brain volume		 836
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001426/ScoringFiles/PGS001426.txt.gz
PGS001558
(GBE_INI25846)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Frontal Orbital Cortex (L) neuroimaging measurement,
grey matter volume measurement		 826
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001558/ScoringFiles/PGS001558.txt.gz
PGS001644
(GBE_INI25489)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA FA in tract acoustic radiation (R) neuroimaging measurement,
brain volume		 826
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001644/ScoringFiles/PGS001644.txt.gz
PGS001904
(portability-PLR_ECG_PQ_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PQ interval PR interval 826
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001904/ScoringFiles/PGS001904.txt.gz
PGS001738
(GBE_INI25638)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L3 in tract inferior longitudinal fasciculus (R) neuroimaging measurement,
brain volume		 825
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001738/ScoringFiles/PGS001738.txt.gz
PGS001817
(portability-PLR_250.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 825
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001817/ScoringFiles/PGS001817.txt.gz
PGS001441
(GBE_INI25081)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in superior corona radiata on FA skeleton (L) neuroimaging measurement,
brain volume		 821
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001441/ScoringFiles/PGS001441.txt.gz
PGS001391
(GBE_INI20453)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ever taken cannabis Cannabis use 819
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001391/ScoringFiles/PGS001391.txt.gz
PGS001627
(GBE_INI25912)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in VIIIb Cerebellum (L) neuroimaging measurement,
grey matter volume measurement		 819
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001627/ScoringFiles/PGS001627.txt.gz
PGS001663
(GBE_INI25652)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract anterior thalamic radiation (L) neuroimaging measurement,
brain volume		 817
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001663/ScoringFiles/PGS001663.txt.gz
PGS002530
(disease_ASTHMA_DIAGNOSED.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Asthma asthma 817
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002530/ScoringFiles/PGS002530.txt.gz
PGS001722
(GBE_INI25609)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L2 in tract inferior fronto-occipital fasciculus (R) neuroimaging measurement,
brain volume		 814
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001722/ScoringFiles/PGS001722.txt.gz
PGS001750
(GBE_INI25527)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MD in tract inferior fronto-occipital fasciculus (L) neuroimaging measurement,
brain volume		 813
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001750/ScoringFiles/PGS001750.txt.gz
PGS002553
(disease_HI_CHOL_SELF_REP.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 High cholesterol Hypercholesterolemia 810
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002553/ScoringFiles/PGS002553.txt.gz
PGS000824
(LDL-C_PGS)
 PGP000210 |
Zubair N et al. Sci Rep (2019)
 LDL cholesterol low density lipoprotein cholesterol measurement 809
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000824/ScoringFiles/PGS000824.txt.gz - Check Terms/Licenses
PGS001307
(GBE_HC1102)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ulcerative colitis (time-to-event) ulcerative colitis 809
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001307/ScoringFiles/PGS001307.txt.gz
PGS001557
(GBE_INI25862)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Frontal Operculum Cortex (L) neuroimaging measurement,
grey matter volume measurement		 804
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001557/ScoringFiles/PGS001557.txt.gz
PGS001812
(portability-PLR_211)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Benign neoplasm of other parts of digestive system benign digestive system neoplasm 801
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001812/ScoringFiles/PGS001812.txt.gz
PGS004261
(GenoBoost_psoriasis_1)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Psoriasis psoriasis 800
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004261/ScoringFiles/PGS004261.txt.gz
PGS004263
(GenoBoost_psoriasis_3)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Psoriasis psoriasis 800
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004263/ScoringFiles/PGS004263.txt.gz
PGS001729
(GBE_INI25624)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L3 in tract acoustic radiation (R) neuroimaging measurement,
brain volume		 794
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001729/ScoringFiles/PGS001729.txt.gz
PGS001863
(portability-PLR_593)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hematuria Hematuria 794
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001863/ScoringFiles/PGS001863.txt.gz
PGS001724
(GBE_INI25611)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L2 in tract inferior longitudinal fasciculus (R) neuroimaging measurement,
brain volume		 793
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001724/ScoringFiles/PGS001724.txt.gz
PGS003610
(L_CA1_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left CA1 head volume hippocampal CA1 volume 792
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003610/ScoringFiles/PGS003610.txt.gz
PGS001664
(GBE_INI25653)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract anterior thalamic radiation (R) neuroimaging measurement,
brain volume		 791
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001664/ScoringFiles/PGS001664.txt.gz
PGS001113
(GBE_BIN_FC7006154)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Aspirin use self-reported aspirin use measurement 790
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001113/ScoringFiles/PGS001113.txt.gz
PGS001859
(portability-PLR_565.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Anal and rectal polyp polyp of rectum,
anal polyp		 789
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001859/ScoringFiles/PGS001859.txt.gz
PGS001024
(GBE_HC61)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hemorrhoid hemorrhoid 786
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001024/ScoringFiles/PGS001024.txt.gz
PGS001576
(GBE_INI25853)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Lingual Gyrus (R) neuroimaging measurement,
grey matter volume measurement		 781
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001576/ScoringFiles/PGS001576.txt.gz
PGS001618
(GBE_INI25910)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Vermis VIIIa Cerebellum neuroimaging measurement,
grey matter volume measurement		 776
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001618/ScoringFiles/PGS001618.txt.gz
PGS001565
(GBE_INI25893)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in I-IV Cerebellum (L) neuroimaging measurement,
grey matter volume measurement		 775
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001565/ScoringFiles/PGS001565.txt.gz
PGS004121
(pt_clump_nested.CV.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 774
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004121/ScoringFiles/PGS004121.txt.gz
PGS001647
(GBE_INI25492)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA FA in tract cingulate gyrus part of cingulum (L) neuroimaging measurement,
brain volume		 773
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001647/ScoringFiles/PGS001647.txt.gz
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