Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002690
(disease_ENDOCRINE_DIABETES.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Endocrine and diabetes diseases diabetes mellitus,
endocrine system disorder		 905,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002690/ScoringFiles/PGS002690.txt.gz
PGS001326
(GBE_HC431)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Emphysema pulmonary emphysema 42
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001326/ScoringFiles/PGS001326.txt.gz
PGS000682
(snpnet.eGFR)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 eGFR [ml/min/1.73m2] glomerular filtration rate 17,467
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000682/ScoringFiles/PGS000682.txt.gz - Check Terms/Licenses
PGS003989
(dbslmm.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,141,637
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003989/ScoringFiles/PGS003989.txt.gz
PGS004005
(lassosum.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 15,373
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004005/ScoringFiles/PGS004005.txt.gz
PGS004017
(lassosum.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 88,605
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004017/ScoringFiles/PGS004017.txt.gz
PGS004031
(ldpred2.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,050,295
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004031/ScoringFiles/PGS004031.txt.gz
PGS004046
(ldpred2.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,050,295
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004046/ScoringFiles/PGS004046.txt.gz
PGS004059
(megaprs.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 846,995
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004059/ScoringFiles/PGS004059.txt.gz
PGS004075
(megaprs.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 846,995
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004075/ScoringFiles/PGS004075.txt.gz
PGS004089
(prscs.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,109,217
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004089/ScoringFiles/PGS004089.txt.gz
PGS004113
(pt_clump.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 301
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004113/ScoringFiles/PGS004113.txt.gz
PGS004129
(pt_clump_nested.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 8,543
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004129/ScoringFiles/PGS004129.txt.gz
PGS004143
(sbayesr.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 804,867
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004143/ScoringFiles/PGS004143.txt.gz
PGS004159
(UKBB_EnsPGS.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,141,659
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004159/ScoringFiles/PGS004159.txt.gz
PGS005318
(eGFR_PRS)
 PGP000766 |
Türkmen D et al. Pharmacogenomics J (2024)
 eGFR glomerular filtration rate 49
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005318/ScoringFiles/PGS005318.txt.gz
PGS000944
(GBE_HC261)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Eczema, dermatitis Eczematoid dermatitis,
dermatitis		 598
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000944/ScoringFiles/PGS000944.txt.gz
PGS002323
(disease_ALLERGY_ECZEMA_DIAGNOSED.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002323/ScoringFiles/PGS002323.txt.gz
PGS002363
(disease_ALLERGY_ECZEMA_DIAGNOSED.BOLT-LMM-BBJ)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 920,927
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002363/ScoringFiles/PGS002363.txt.gz
PGS002395
(disease_ALLERGY_ECZEMA_DIAGNOSED.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 4,367
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002395/ScoringFiles/PGS002395.txt.gz
PGS002444
(disease_ALLERGY_ECZEMA_DIAGNOSED.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 16,802
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002444/ScoringFiles/PGS002444.txt.gz
PGS002493
(disease_ALLERGY_ECZEMA_DIAGNOSED.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 100,504
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002493/ScoringFiles/PGS002493.txt.gz
PGS002542
(disease_ALLERGY_ECZEMA_DIAGNOSED.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 1,104
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002542/ScoringFiles/PGS002542.txt.gz
PGS002591
(disease_ALLERGY_ECZEMA_DIAGNOSED.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 667
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002591/ScoringFiles/PGS002591.txt.gz
PGS002640
(disease_ALLERGY_ECZEMA_DIAGNOSED.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 241,530
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002640/ScoringFiles/PGS002640.txt.gz
PGS002689
(disease_ALLERGY_ECZEMA_DIAGNOSED.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eczema Eczematoid dermatitis 957,578
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002689/ScoringFiles/PGS002689.txt.gz
PGS004612
(PRSECG_AI)
 PGP000591 |
Wang X et al. Circ Genom Precis Med (2023)
 ECG-AI predicted 5-year risk of atrial fibrillation atrial fibrillation 1,117,399
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004612/ScoringFiles/PGS004612.txt.gz
PGS001247
(GBE_BIN_FC40001727)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ease of skin tanning (never tan, only burn) suntan 3,159
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001247/ScoringFiles/PGS001247.txt.gz
PGS001246
(GBE_BIN_FC10001727)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ease of skin tanning (get very tanned) suntan 4,130
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001246/ScoringFiles/PGS001246.txt.gz
PGS001245
(GBE_BIN_FC20001727)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ease of skin tanning (get moderately tanned) suntan 2,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001245/ScoringFiles/PGS001245.txt.gz
PGS001244
(GBE_BIN_FC30001727)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ease of skin tanning (get mildly or occasionally tanned) suntan 958
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001244/ScoringFiles/PGS001244.txt.gz
PGS001937
(portability-PLR_less_tanned)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ease of skin tanning suntan 16,197
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001937/ScoringFiles/PGS001937.txt.gz
PGS002155
(portability-ldpred2_less_tanned)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ease of skin tanning suntan 240,701
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002155/ScoringFiles/PGS002155.txt.gz
PGS003760
(PRS49_EOCRC)
 PGP000480 |
Wang H et al. Genome Med (2023)
 Early onset colorectal cancer colorectal cancer 49
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003760/ScoringFiles/PGS003760.txt.gz
PGS000716
(PGS295_elbs)
 PGP000132 |
Richardson TG et al. BMJ (2020)
 Early life body size body mass index,
comparative body size at age 10, self-reported		 295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000716/ScoringFiles/PGS000716.txt.gz
PGS004448
(disease.E78.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 E78 (Disorders of lipoprotein metabolism and other lipidaemias) metabolic disease 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004448/ScoringFiles/PGS004448.txt.gz
PGS004518
(meta.E78.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 E78 (Disorders of lipoprotein metabolism and other lipidaemias) metabolic disease 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004518/ScoringFiles/PGS004518.txt.gz
PGS004447
(disease.E66.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 E66 (Obesity) obesity disorder 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004447/ScoringFiles/PGS004447.txt.gz
PGS004517
(meta.E66.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 E66 (Obesity) obesity disorder 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004517/ScoringFiles/PGS004517.txt.gz
PGS004446
(disease.E03.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 E03 (Other hypothyroidism) hypothyroidism 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004446/ScoringFiles/PGS004446.txt.gz
PGS004516
(meta.E03.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 E03 (Other hypothyroidism) hypothyroidism 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004516/ScoringFiles/PGS004516.txt.gz
PGS004431
(X4290.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Duration screen displayed visual acuity measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004431/ScoringFiles/PGS004431.txt.gz
PGS001073
(GBE_INI874)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Duration of walks physical activity measurement 1,323
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001073/ScoringFiles/PGS001073.txt.gz
PGS001254
(GBE_HC177)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Dupuytren's contracture Dupuytren Contracture 11
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001254/ScoringFiles/PGS001254.txt.gz
PGS001852
(portability-PLR_535.6)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Duodenitis duodenitis 191
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001852/ScoringFiles/PGS001852.txt.gz
PGS001390
(GBE_HC1084)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Duodenal ulcer (time-to-event) duodenal ulcer 220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001390/ScoringFiles/PGS001390.txt.gz
PGS003373
(GSCAN_DrnkWk_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Drinks per week alcohol consumption quality 1,177,071
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003373/ScoringFiles/PGS003373.txt.gz
PGS003374
(GSCAN_DrnkWk_2022_PRS_WEIGHTS_AMR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Drinks per week alcohol consumption quality 1,109,568
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003374/ScoringFiles/PGS003374.txt.gz
PGS003375
(GSCAN_DrnkWk_2022_PRS_WEIGHTS_EAS)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Drinks per week alcohol consumption quality 856,333
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003375/ScoringFiles/PGS003375.txt.gz
PGS003376
(GSCAN_DrnkWk_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Drinks per week alcohol consumption quality 1,055,988
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003376/ScoringFiles/PGS003376.txt.gz
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