Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003592
(L_GC-ML-DG_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left granule cell and molecular layer of the dentate gyrus body volume dentate gyrus volume 527
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003592/ScoringFiles/PGS003592.txt.gz
PGS001005
(GBE_INI134)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Number of self reported cancers number of cancers, self-reported 526
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001005/ScoringFiles/PGS001005.txt.gz
PGS000620
(PRSWEB_PHECODE191.11_C71_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Brain cancer brain cancer 522
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000620/ScoringFiles/PGS000620.txt.gz
PGS004171
(t1d_1)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Type 1 diabetes type 1 diabetes mellitus 520
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004171/ScoringFiles/PGS004171.txt.gz
PGS001257
(GBE_INI1737)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Childhood sunburn sunburn 519
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001257/ScoringFiles/PGS001257.txt.gz
PGS002944
(ExPRSweb_Glucose_FGovertime-corrected_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Glucose blood glucose amount 519
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002944/ScoringFiles/PGS002944.txt.gz
PGS000844
(VAT_Mass)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Predicted visceral adipose tissue visceral adipose tissue quantity 518
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000844/ScoringFiles/PGS000844.txt.gz
PGS002567
(cov_SMOKING_STATUS.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Smoking status smoking status measurement 517
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002567/ScoringFiles/PGS002567.txt.gz
PGS000168
(hgb)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Hemoglobin concentration hemoglobin measurement 515
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000168/ScoringFiles/PGS000168.txt.gz
PGS001704
(GBE_INI25580)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L1 in tract forceps minor neuroimaging measurement,
brain volume		 514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001704/ScoringFiles/PGS001704.txt.gz
PGS002587
(cov_EDU_COLLEGE.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 College education educational attainment 514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002587/ScoringFiles/PGS002587.txt.gz
PGS001622
(GBE_INI25899)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in VI Cerebellum (R) neuroimaging measurement,
grey matter volume measurement		 513
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001622/ScoringFiles/PGS001622.txt.gz
PGS001677
(GBE_INI25666)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract middle cerebellar peduncle neuroimaging measurement,
brain volume		 512
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001677/ScoringFiles/PGS001677.txt.gz
PGS000415
(PRSWEB_PHECODE172.1_C3-MELANOMA-SKIN_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Melanomas of skin (diagnosis or history) melanoma 505
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000415/ScoringFiles/PGS000415.txt.gz
PGS002579
(disease_ASTHMA_DIAGNOSED.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Asthma asthma 503
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002579/ScoringFiles/PGS002579.txt.gz
PGS000167
(hct)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Hematocrit hematocrit 502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000167/ScoringFiles/PGS000167.txt.gz
PGS001625
(GBE_INI25909)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in VIIIa Cerebellum (L) neuroimaging measurement,
grey matter volume measurement		 500
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001625/ScoringFiles/PGS001625.txt.gz
PGS003196
(ExPRSweb_VitD_30890-raw_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D level 500
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003196/ScoringFiles/PGS003196.txt.gz
PGS001112
(GBE_BIN_FC1006154)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Aspirin aspirin use measurement 499
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001112/ScoringFiles/PGS001112.txt.gz
PGS001707
(GBE_INI25583)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L1 in tract inferior longitudinal fasciculus (L) neuroimaging measurement,
brain volume		 499
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001707/ScoringFiles/PGS001707.txt.gz
PGS001334
(GBE_HC1035)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other chronic obstructive pulmonary disease (time-to-event) chronic obstructive pulmonary disease 498
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001334/ScoringFiles/PGS001334.txt.gz
PGS001860
(portability-PLR_571.5)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other chronic nonalcoholic liver disease liver disorder 497
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001860/ScoringFiles/PGS001860.txt.gz
PGS003640
(R_CA4_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right CA4 body volume hippocampal CA4 volume 497
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003640/ScoringFiles/PGS003640.txt.gz
PGS003190
(ExPRSweb_VitD_30890-irnt_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D level 495
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003190/ScoringFiles/PGS003190.txt.gz
PGS000182
(neut)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Neutrophil count neutrophil count 492
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000182/ScoringFiles/PGS000182.txt.gz
PGS001831
(portability-PLR_335)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Multiple sclerosis multiple sclerosis 491
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001831/ScoringFiles/PGS001831.txt.gz
PGS001578
(GBE_INI25789)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Middle Frontal Gyrus (R) neuroimaging measurement,
grey matter volume measurement		 489
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001578/ScoringFiles/PGS001578.txt.gz
PGS001894
(portability-PLR_celiac_gluten)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diagnosed with coeliac disease or gluten sensitivity celiac disease 484
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001894/ScoringFiles/PGS001894.txt.gz
PGS001332
(GBE_HC442)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 482
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001332/ScoringFiles/PGS001332.txt.gz
PGS002596
(biochemistry_Glucose.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Glucose glucose measurement 482
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002596/ScoringFiles/PGS002596.txt.gz
PGS005095
(WHRadjBMI_GRS)
 PGP000686 |
Christiansen MR et al. Diabetes (2023)
 WHR adjusted for BMI BMI-adjusted waist-hip ratio 481
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005095/ScoringFiles/PGS005095.txt.gz
PGS001303
(GBE_HC872)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other cataract (time-to-event) cataract 480
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001303/ScoringFiles/PGS001303.txt.gz
PGS001444
(GBE_INI25098)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in superior fronto-occipital fasciculus on FA skeleton (R) neuroimaging measurement,
brain volume		 480
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001444/ScoringFiles/PGS001444.txt.gz
PGS001691
(GBE_INI25708)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ISOVF in tract cingulate gyrus part of cingulum (L) neuroimaging measurement,
brain volume		 477
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001691/ScoringFiles/PGS001691.txt.gz
PGS000173
(lymph_p)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Lymphocyte percentage of white cells lymphocyte percentage of leukocytes 472
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000173/ScoringFiles/PGS000173.txt.gz
PGS002561
(mental_NEUROTICISM.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Neuroticism neuroticism measurement 469
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002561/ScoringFiles/PGS002561.txt.gz
PGS000439
(PRSWEB_PHECODE172.2_C44_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Other non-epithelial skin cancer skin cancer 467
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000439/ScoringFiles/PGS000439.txt.gz
PGS001286
(GBE_BIN22126)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Allergic disease (hay fever or allergic rhinitis) (diagnosed by doctor) allergic disease 466
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001286/ScoringFiles/PGS001286.txt.gz
PGS001500
(GBE_INI25467)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ISOVF in posterior corona radiata on FA skeleton (L) neuroimaging measurement,
brain volume		 466
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001500/ScoringFiles/PGS001500.txt.gz
PGS003427
(lvmi)
 PGP000434 |
Khurshid S et al. Nat Commun (2023)
 Left ventricular mass index (LVMI) left ventricular mass index 465
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003427/ScoringFiles/PGS003427.txt.gz
PGS004930
(celiac_disease_snpnet_combined)
 PGP000665 |
Moreno-Grau S et al. Human Genomics (2024)
 Celiac disease celiac disease 463
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004930/ScoringFiles/PGS004930.txt.gz
PGS000299
(GRS462_WHRadjBMI)
 PGP000092 |
Xie T et al. Circ Genom Precis Med (2020)
 Waist-to-hip ratio (body mass index adjusted) BMI-adjusted waist-hip ratio 462
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000299/ScoringFiles/PGS000299.txt.gz
PGS003416
(MTAGPRS)
 PGP000429 |
Seviiri M et al. Nat Commun (2022)
 Basal cell carcinoma (MTAG) basal cell carcinoma 462
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003416/ScoringFiles/PGS003416.txt.gz
PGS003659
(L_hippocampal_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left hippocampal body volume hippocampal volume 462
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003659/ScoringFiles/PGS003659.txt.gz
PGS001873
(portability-PLR_704)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diseases of hair and hair follicles disorder of pilosebaceous unit 461
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001873/ScoringFiles/PGS001873.txt.gz
PGS003275
(ExPRSweb_Creatine_eGFRcrea-overall-IV-2GC_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine level		 458
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003275/ScoringFiles/PGS003275.txt.gz
PGS003276
(ExPRSweb_Creatine_eGFRcrea-overall-IV-2GC_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine level		 458
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003276/ScoringFiles/PGS003276.txt.gz
PGS001711
(GBE_INI25592)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L1 in tract superior thalamic radiation (L) neuroimaging measurement,
brain volume		 457
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001711/ScoringFiles/PGS001711.txt.gz
PGS001138
(GBE_BIN10030820)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Rheumatoid factor [> 16 IU/mL] rheumatoid factor measurement 456
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001138/ScoringFiles/PGS001138.txt.gz
PGS001435
(GBE_INI25076)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in retrolenticular part of internal capsule on FA skeleton (R) neuroimaging measurement,
brain volume		 456
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001435/ScoringFiles/PGS001435.txt.gz
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