Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001534
(GBE_INI25781)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Total Volume of white matter hyperintensities (from T1 and T2 FLAIR images) neuroimaging measurement,
white matter hyperintensity measurement		 355
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001534/ScoringFiles/PGS001534.txt.gz
PGS003062
(ExPRSweb_Smoking_SmokingInitiation_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Smoking status smoking status measurement 355
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003062/ScoringFiles/PGS003062.txt.gz
PGS003207
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 355
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003207/ScoringFiles/PGS003207.txt.gz
PGS003751
(ModelT2D_over45)
 PGP000472 |
Shoaib M et al. Genet Epidemiol (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 354
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003751/ScoringFiles/PGS003751.txt.gz
PGS004132
(pt_clump_nested.CV.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 354
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004132/ScoringFiles/PGS004132.txt.gz
PGS003255
(ExPRSweb_Creatine_eGFRcrea-overall-EA_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine level		 352
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003255/ScoringFiles/PGS003255.txt.gz
PGS001182
(GBE_BIN10030800)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Estradiol [> 212 pmol/L] estradiol measurement 351
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001182/ScoringFiles/PGS001182.txt.gz
PGS003126
(ExPRSweb_Thinness_STILTS-UKHLS_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Thinness body mass index 351
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003126/ScoringFiles/PGS003126.txt.gz
PGS001259
(GBE_HC49)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hayfever/allergic rhinitis seasonal allergic rhinitis 349
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001259/ScoringFiles/PGS001259.txt.gz
PGS003280
(ExPRSweb_CysC_30720-irnt_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 346
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003280/ScoringFiles/PGS003280.txt.gz
PGS003596
(L_GC-ML-DG_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left granule cell and molecular layer of the dentate gyrus body volume dentate gyrus volume 346
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003596/ScoringFiles/PGS003596.txt.gz
PGS001533
(GBE_QT_FC1004803)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Tinnitus severity Tinnitus 343
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001533/ScoringFiles/PGS001533.txt.gz
PGS001423
(GBE_INI25062)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in corticospinal tract on FA skeleton (R) neuroimaging measurement,
brain volume		 342
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001423/ScoringFiles/PGS001423.txt.gz
PGS001763
(GBE_INI25562)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract posterior thalamic radiation (R) neuroimaging measurement,
brain volume		 342
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001763/ScoringFiles/PGS001763.txt.gz
PGS001250
(GBE_HC1304)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Calculus of kidney and ureter (time-to-event) nephrolithiasis,
ureterolithiasis		 341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001250/ScoringFiles/PGS001250.txt.gz
PGS003747
(GRS341_SI)
 PGP000471 |
Tran JH et al. Transl Vis Sci Technol (2023)
 Smoking initiation smoking initiation 341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003747/ScoringFiles/PGS003747.txt.gz
PGS001913
(portability-PLR_F_length_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 339
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001913/ScoringFiles/PGS001913.txt.gz
PGS000505
(PRSWEB_PHECODE174.1_Onco-iCOGS-Overall-BRCA_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 334
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000505/ScoringFiles/PGS000505.txt.gz
PGS000506
(PRSWEB_PHECODE174.1_Onco-iCOGS-Overall-BRCA_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 334
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000506/ScoringFiles/PGS000506.txt.gz
PGS001387
(GBE_INI21058)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Degree bothered by urinary frequency/bladder irritability in the last 3 months health-related quality of life measurement 333
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001387/ScoringFiles/PGS001387.txt.gz
PGS003752
(ModelT2D)
 PGP000472 |
Shoaib M et al. Genet Epidemiol (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 333
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003752/ScoringFiles/PGS003752.txt.gz
PGS000212
(PRS330_LumA)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal A-like) luminal A breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000212/ScoringFiles/PGS000212.txt.gz
PGS000213
(PRS330_LumBHER2neg)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal B/HER2-negative-like) HER2 negative breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000213/ScoringFiles/PGS000213.txt.gz
PGS000214
(PRS330_LumB)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal B-like) luminal B breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000214/ScoringFiles/PGS000214.txt.gz
PGS000215
(PRS330_HER2)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (HER2-enriched-like) HER2 Positive Breast Carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000215/ScoringFiles/PGS000215.txt.gz
PGS000216
(PRS330_TN)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (triple negative) triple-negative breast cancer 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000216/ScoringFiles/PGS000216.txt.gz
PGS000863
(Cardiovascular)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Cardiovascular disease cardiovascular disease 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000863/ScoringFiles/PGS000863.txt.gz
PGS000906
(PRS-5)
 PGP000237 |
Tesi N et al. J Gerontol A Biol Sci Med Sci (2021)
 Longevity life span determination trait 330
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000906/ScoringFiles/PGS000906.txt.gz
PGS001421
(GBE_INI25093)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in cingulum hippocampus on FA skeleton (L) neuroimaging measurement,
brain volume		 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001421/ScoringFiles/PGS001421.txt.gz
PGS001840
(portability-PLR_415)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulmonary heart disease cor pulmonale 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001840/ScoringFiles/PGS001840.txt.gz
PGS001282
(GBE_HC815)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Migraine (time-to-event) migraine disorder 329
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001282/ScoringFiles/PGS001282.txt.gz
PGS001044
(GBE_BIN_FC2006179)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Glucosamine intake vitamin supplement exposure measurement 324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001044/ScoringFiles/PGS001044.txt.gz
PGS003651
(L_hippocampal_tail_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left hippocampal tail volume hippocampal formation volume 324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003651/ScoringFiles/PGS003651.txt.gz
PGS001309
(GBE_HC1212)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other rheumatoid arthritis (time-to-event) rheumatoid arthritis 323
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001309/ScoringFiles/PGS001309.txt.gz
PGS001706
(GBE_INI25582)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L1 in tract inferior fronto-occipital fasciculus (R) neuroimaging measurement,
brain volume		 322
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001706/ScoringFiles/PGS001706.txt.gz
PGS001814
(portability-PLR_241.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Nontoxic multinodular goiter multinodular goiter,
nontoxic goiter		 322
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001814/ScoringFiles/PGS001814.txt.gz
PGS001137
(GBE_HC302)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Retinal detachment retinal detachment 321
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001137/ScoringFiles/PGS001137.txt.gz
PGS000835
(ISR)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Insulin secretion rate insulin secretion trait 319
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000835/ScoringFiles/PGS000835.txt.gz
PGS001364
(GBE_INI5113)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 6mm cylindrical power angle (L) eye measurement 319
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001364/ScoringFiles/PGS001364.txt.gz
PGS001590
(GBE_INI25794)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Precentral Gyrus (L) neuroimaging measurement,
grey matter volume measurement		 318
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001590/ScoringFiles/PGS001590.txt.gz
PGS005098
(psa2024_prs_318)
 PGP000692 |
Hoffmann TJ et al. Nat Genet (2025)
 Prostate specific antigen prostate specific antigen amount 318
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005098/ScoringFiles/PGS005098.txt.gz
PGS001273
(GBE_HC22)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Osteoporosis osteoporosis 316
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001273/ScoringFiles/PGS001273.txt.gz
PGS001708
(GBE_INI25584)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L1 in tract inferior longitudinal fasciculus (R) neuroimaging measurement,
brain volume		 316
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001708/ScoringFiles/PGS001708.txt.gz
PGS001744
(GBE_INI25516)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MD in tract acoustic radiation (R) neuroimaging measurement,
brain volume		 315
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001744/ScoringFiles/PGS001744.txt.gz
PGS004175
(t1d_5)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Type 1 diabetes type 1 diabetes mellitus 315
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004175/ScoringFiles/PGS004175.txt.gz
PGS003270
(ExPRSweb_Creatine_eGFRcrea-overall-EA_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine level		 314
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003270/ScoringFiles/PGS003270.txt.gz
PGS000004
(PRS313_BC)
 PGP000002 |
Mavaddat N et al. Am J Hum Genet (2018)
 Breast cancer breast carcinoma 313
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000004/ScoringFiles/PGS000004.txt.gz
PGS000005
(PRS313_ERpos)
 PGP000002 |
Mavaddat N et al. Am J Hum Genet (2018)
 ER-positive breast cancer estrogen-receptor positive breast cancer 313
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000005/ScoringFiles/PGS000005.txt.gz
PGS000006
(PRS313_ERneg)
 PGP000002 |
Mavaddat N et al. Am J Hum Genet (2018)
 ER-negative breast cancer estrogen-receptor negative breast cancer 313
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000006/ScoringFiles/PGS000006.txt.gz
PGS000336
(GRS313_Chron)
 PGP000103 |
Maukonen M et al. J Biol Rhythms (2020)
 Chronotype chronotype measurement 313
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000336/ScoringFiles/PGS000336.txt.gz
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