Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002113
(portability-ldpred2_depression_stress_trauma)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Depression possibly related to stressful or traumatic event depressive episode measurement,
trauma exposure measurement		 545,334
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002113/ScoringFiles/PGS002113.txt.gz
PGS000145
(ICD10Dep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Depression (ICD-10 defined) major depressive disorder 21,510
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000145/ScoringFiles/PGS000145.txt.gz
PGS000767
(GRS14)
 PGP000174 |
Guffanti G et al. Transl Psychiatry (2019)
 Depression depressive symptom measurement,
major depressive disorder		 14
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000767/ScoringFiles/PGS000767.txt.gz
PGS001829
(portability-PLR_296.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Depression depressive disorder 7,534
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001829/ScoringFiles/PGS001829.txt.gz
PGS002036
(portability-ldpred2_296.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Depression depressive disorder 807,338
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002036/ScoringFiles/PGS002036.txt.gz
PGS002759
(Depression_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Depression major depressive disorder 1,091,613
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002759/ScoringFiles/PGS002759.txt.gz
PGS004759
(depression_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Depression major depressive disorder 1,538,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004759/ScoringFiles/PGS004759.txt.gz
PGS004760
(depression_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Depression major depressive disorder 2,141,267
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004760/ScoringFiles/PGS004760.txt.gz
PGS000995
(GBE_BIN_FC6006149)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Dentures dentures 6,042
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000995/ScoringFiles/PGS000995.txt.gz
PGS000945
(GBE_HC710)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Dementia in Alzheimer's disease (time-to-event) dementia,
Alzheimer disease		 26
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000945/ScoringFiles/PGS000945.txt.gz
PGS001827
(portability-PLR_290.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Dementia dementia 33
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001827/ScoringFiles/PGS001827.txt.gz
PGS002035
(portability-ldpred2_290.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Dementia dementia 39,752
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002035/ScoringFiles/PGS002035.txt.gz
PGS003334
(PRS_dementia)
 PGP000402 |
Chen Y et al. Arch Gerontol Geriatr (2022)
 Dementia dementia 27
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003334/ScoringFiles/PGS003334.txt.gz
PGS004318
(PRS29_dementia)
 PGP000548 |
Feng J et al. BMC Geriatr (2023)
 Dementia dementia 29
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004318/ScoringFiles/PGS004318.txt.gz
PGS001387
(GBE_INI21058)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Degree bothered by urinary frequency/bladder irritability in the last 3 months health-related quality of life measurement 333
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001387/ScoringFiles/PGS001387.txt.gz
PGS001386
(GBE_INI21049)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Degree bothered by pain in arms/legs/joints in the past 3 months health-related quality of life measurement 534
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001386/ScoringFiles/PGS001386.txt.gz
PGS001385
(GBE_INI21051)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Degree bothered by headaches in the last 3 months health-related quality of life measurement 9
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001385/ScoringFiles/PGS001385.txt.gz
PGS001384
(GBE_INI21060)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Degree bothered by feeling tired all the time in the last 3 months health-related quality of life measurement 1,526
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001384/ScoringFiles/PGS001384.txt.gz
PGS001265
(GBE_BIN_FC6006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Deep vein thrombosis (leg) deep vein thrombosis 1,530
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001265/ScoringFiles/PGS001265.txt.gz
PGS001266
(GBE_BIN_FC1006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Deep vein thrombosis (diagnosed by doctor) deep vein thrombosis 1,773
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001266/ScoringFiles/PGS001266.txt.gz
PGS001264
(GBE_HC166)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Deep vein thrombosis deep vein thrombosis 839
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001264/ScoringFiles/PGS001264.txt.gz
PGS000926
(GBE_QT_FC1001220)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Daytime dozing / sleeping (narcolepsy) narcolepsy 4,194
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000926/ScoringFiles/PGS000926.txt.gz
PGS001995
(portability-PLR_narcolepsy)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Daytime dozing / sleeping (narcolepsy) narcolepsy 27,143
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001995/ScoringFiles/PGS001995.txt.gz
PGS002212
(portability-ldpred2_narcolepsy)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Daytime dozing / sleeping (narcolepsy) narcolepsy 893,802
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002212/ScoringFiles/PGS002212.txt.gz
PGS004445
(disease.D12.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 D12 (Benign neoplasm of colon, rectum, anus and anal canal) colorectal carcinoma 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004445/ScoringFiles/PGS004445.txt.gz
PGS004515
(meta.D12.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 D12 (Benign neoplasm of colon, rectum, anus and anal canal) colorectal carcinoma 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004515/ScoringFiles/PGS004515.txt.gz
PGS000870
(CFRD_18)
 PGP000214 |
Aksit MA et al. J Clin Endocrinol Metab (2020)
 Cystic fibrosis related diabetes complication 18
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000870/ScoringFiles/PGS000870.txt.gz
PGS003589
(UKB_cycproduction_EUR)
 PGP000463 |
Kleeman SO et al. Cell Genom (2023)
 Cystatin C production cystatin C measurement 1,031,527
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003589/ScoringFiles/PGS003589.txt.gz
PGS003590
(UKB_cycproduction_EUR_exome)
 PGP000463 |
Kleeman SO et al. Cell Genom (2023)
 Cystatin C production cystatin C measurement 352,549
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003590/ScoringFiles/PGS003590.txt.gz
PGS000680
(snpnet.Cystatin_C)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Cystatin C [mg/L] cystatin C measurement 24,487
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000680/ScoringFiles/PGS000680.txt.gz - Check Terms/Licenses
PGS001947
(portability-PLR_log_cystatinC)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 84,459
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001947/ScoringFiles/PGS001947.txt.gz
PGS002165
(portability-ldpred2_log_cystatinC)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 781,302
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002165/ScoringFiles/PGS002165.txt.gz
PGS003279
(ExPRSweb_CysC_30720-irnt_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 879,560
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003279/ScoringFiles/PGS003279.txt.gz
PGS003280
(ExPRSweb_CysC_30720-irnt_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 346
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003280/ScoringFiles/PGS003280.txt.gz
PGS003281
(ExPRSweb_CysC_30720-irnt_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 415
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003281/ScoringFiles/PGS003281.txt.gz
PGS003282
(ExPRSweb_CysC_30720-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 7,451,904
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003282/ScoringFiles/PGS003282.txt.gz
PGS003283
(ExPRSweb_CysC_30720-irnt_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 1,113,831
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003283/ScoringFiles/PGS003283.txt.gz
PGS003284
(ExPRSweb_CysC_30720-raw_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 735,756
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003284/ScoringFiles/PGS003284.txt.gz
PGS003285
(ExPRSweb_CysC_30720-raw_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 931
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003285/ScoringFiles/PGS003285.txt.gz
PGS003286
(ExPRSweb_CysC_30720-raw_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 1,057
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003286/ScoringFiles/PGS003286.txt.gz
PGS003287
(ExPRSweb_CysC_30720-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 7,451,726
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003287/ScoringFiles/PGS003287.txt.gz
PGS003288
(ExPRSweb_CysC_30720-raw_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 1,113,831
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003288/ScoringFiles/PGS003288.txt.gz
PGS003528
(cont-decay-log_cystatinC)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Cystatin C cystatin C measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003528/ScoringFiles/PGS003528.txt.gz
PGS000226
(CSTB)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Cystatin-B (CSTB) serum levels blood protein amount 552,195
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000226/ScoringFiles/PGS000226.txt.gz
PGS000232
(CXCL6)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 C-X-C motif chemokine 6 (CXCL6) serum levels blood protein amount 552,061
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000232/ScoringFiles/PGS000232.txt.gz
PGS000230
(CXCL1)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 C-X-C motif chemokine 1 (CXCL1) serum levels blood protein amount 552,234
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000230/ScoringFiles/PGS000230.txt.gz
PGS000231
(CXCL16)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 C-X-C motif chemokine 16 (CXCL16) serum levels blood protein amount 552,241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000231/ScoringFiles/PGS000231.txt.gz
PGS000339
(PRS22_CM)
 PGP000106 |
Law MH et al. Hum Mol Genet (2020)
 Cutaneous melanoma cutaneous melanoma 22
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000339/ScoringFiles/PGS000339.txt.gz
PGS000766
(PRS56_CM)
 PGP000172 |
Bakshi A et al. J Natl Cancer Inst (2021)
 Cutaneous melanoma cutaneous melanoma 56
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000766/ScoringFiles/PGS000766.txt.gz
PGS004751
(current_smoker_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 1,076,735
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004751/ScoringFiles/PGS004751.txt.gz
Showing 4001 to 4050 of 5296 rows