Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003721
(R_subiculum_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum body volume subiculum volume 83,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003721/ScoringFiles/PGS003721.txt.gz
PGS003714
(R_subiculum_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 55,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003714/ScoringFiles/PGS003714.txt.gz
PGS003722
(R_subiculum_head_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 51,267
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003722/ScoringFiles/PGS003722.txt.gz
PGS003718
(R_subiculum_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 3,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003718/ScoringFiles/PGS003718.txt.gz
PGS001049
(GBE_BIN2040)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Risk taking behaviour risk-taking behaviour 4,299
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001049/ScoringFiles/PGS001049.txt.gz
PGS000206
(RISK_PC_FT12)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Risk-taking tendency (4-domain principal component model) risk-taking behaviour 1,098,765
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000206/ScoringFiles/PGS000206.txt.gz
PGS000205
(RISK_PC_COGA)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Risk-taking tendency (4-domain principal component model) risk-taking behaviour 1,110,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000205/ScoringFiles/PGS000205.txt.gz
PGS001907
(portability-PLR_ECG_RR_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 RR interval RR interval 1,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001907/ScoringFiles/PGS001907.txt.gz
PGS002121
(portability-ldpred2_ECG_RR_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 RR interval RR interval 616,710
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002121/ScoringFiles/PGS002121.txt.gz
PGS001034
(GBE_QT_FC10001478)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Salt added to food diet measurement 6,651
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001034/ScoringFiles/PGS001034.txt.gz
PGS002084
(portability-ldpred2_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 403,417
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002084/ScoringFiles/PGS002084.txt.gz
PGS000922
(GBE_HC170)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sarcoidosis sarcoidosis 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000922/ScoringFiles/PGS000922.txt.gz
PGS001872
(portability-PLR_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001872/ScoringFiles/PGS001872.txt.gz
PGS000923
(GBE_HC639)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sarcoidosis (time-to-event) sarcoidosis 22
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000923/ScoringFiles/PGS000923.txt.gz
PGS002785
(SCZ_SDPR)
 PGP000370 |
Gui Y et al. Transl Psychiatry (2022)
 Schizophrenia schizophrenia 964,422
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002785/ScoringFiles/PGS002785.txt.gz
PGS000134
(SCZ_GHS)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 830,589
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000134/ScoringFiles/PGS000134.txt.gz
PGS000136
(SCZ_PBK)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 833,502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000136/ScoringFiles/PGS000136.txt.gz
PGS000133
(SCZ_BVU)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 604,645
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000133/ScoringFiles/PGS000133.txt.gz
PGS000135
(SCZ_MTS)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 972,439
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000135/ScoringFiles/PGS000135.txt.gz
PGS002087
(portability-ldpred2_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 206,669
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002087/ScoringFiles/PGS002087.txt.gz
PGS001874
(portability-PLR_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 563
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001874/ScoringFiles/PGS001874.txt.gz
PGS002085
(portability-ldpred2_702.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Seborrheic keratosis seborrheic keratosis 481,233
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002085/ScoringFiles/PGS002085.txt.gz
PGS001140
(GBE_HC1190)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Seborrheic keratosis (time-to-event) seborrheic keratosis 1,368
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001140/ScoringFiles/PGS001140.txt.gz
PGS000143
(GPNoDep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Seen a General Practitioner for nerves, anxiety, tension or depression (without report of low mood or anhedonia) seeing a general practitioner for nerves, anxiety, tension or depression, self-reported 21,042
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000143/ScoringFiles/PGS000143.txt.gz
PGS000141
(Psypsy)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Seen a psychiatrist for nerves, anxiety, tension or depression seeing a psychiatrist for nerves, anxiety, tension or depression, self-reported,
depressive disorder		 22,728
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000141/ScoringFiles/PGS000141.txt.gz
PGS000144
(SelfRepDep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Self-reported depression or depression symptoms depressive symptom measurement,
self-reported trait		 21,828
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000144/ScoringFiles/PGS000144.txt.gz
PGS003568
(cont-decay-sensitive_stomach)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Sensitive stomach health trait 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003568/ScoringFiles/PGS003568.txt.gz
PGS002004
(portability-PLR_sensitive_stomach)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sensitive stomach health trait 3,970
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002004/ScoringFiles/PGS002004.txt.gz
PGS002223
(portability-ldpred2_sensitive_stomach)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sensitive stomach health trait 795,614
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002223/ScoringFiles/PGS002223.txt.gz
PGS001016
(GBE_BIN1950)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sensitivity / hurt feelings feeling emotionally hurt measurement 7,922
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001016/ScoringFiles/PGS001016.txt.gz
PGS002769
(Rheumatoid_arthritis_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Seropositive rheumatoid arthritis rheumatoid arthritis 1,083,565
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002769/ScoringFiles/PGS002769.txt.gz
PGS001311
(GBE_HC1211)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Seropositive rheumatoid arthritis (time-to-event) rheumatoid arthritis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001311/ScoringFiles/PGS001311.txt.gz
PGS000069
(PRS_sEOC)
 PGP000048 |
Yang X et al. J Med Genet (2018)
 Serous epithelial ovarian cancer ovarian serous carcinoma 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000069/ScoringFiles/PGS000069.txt.gz
PGS004749
(creatinine_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 1,469,062
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004749/ScoringFiles/PGS004749.txt.gz
PGS004748
(creatinine_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 2,653,053
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004748/ScoringFiles/PGS004748.txt.gz
PGS004747
(creatinine_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 609,027
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004747/ScoringFiles/PGS004747.txt.gz
PGS004750
(creatinine_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 2,653,053
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004750/ScoringFiles/PGS004750.txt.gz
PGS000321
(snpnet_Testosterone_combined)
 PGP000097 |
Flynn E et al. Eur J Hum Genet (2020)
 Serum testosterone levels testosterone measurement 7,319
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000321/ScoringFiles/PGS000321.txt.gz
PGS000322
(snpnet_Testosterone_female-specific)
 PGP000097 |
Flynn E et al. Eur J Hum Genet (2020)
 Serum testosterone levels in females testosterone measurement,
female		 7,168
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000322/ScoringFiles/PGS000322.txt.gz
PGS000323
(snpnet_Testosterone_male-specific)
 PGP000097 |
Flynn E et al. Eur J Hum Genet (2020)
 Serum testosterone levels in males testosterone measurement,
male		 8,235
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000323/ScoringFiles/PGS000323.txt.gz
PGS000126
(Urate_GRS)
 PGP000063 |
Tin A et al. Nat Genet (2019)
 Serum urate urate measurement 114
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000126/ScoringFiles/PGS000126.txt.gz
PGS000755
(PRS_SUA)
 PGP000161 |
Cho SK et al. Sci Rep (2020)
 Serum uric acid levels uric acid measurement 14
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000755/ScoringFiles/PGS000755.txt.gz
PGS004938
(pgs_data_ldpred)
 PGP000666 |
Kovalenko E et al. Front Med (Lausanne) (2024)
 Severe COVID-19 course COVID-19 955,503
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004938/ScoringFiles/PGS004938.txt.gz
PGS002195
(portability-ldpred2_log_SHBG)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sex hormone binding globulin (SHBG) sex hormone-binding globulin measurement 650,364
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002195/ScoringFiles/PGS002195.txt.gz
PGS003552
(cont-decay-log_SHBG)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Sex hormone binding globulin (SHBG) sex hormone-binding globulin measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003552/ScoringFiles/PGS003552.txt.gz
PGS001977
(portability-PLR_log_SHBG)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sex hormone binding globulin (SHBG) sex hormone-binding globulin measurement 51,427
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001977/ScoringFiles/PGS001977.txt.gz
PGS004340
(X30830.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 SHBG (nmol/L) sex hormone-binding globulin 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004340/ScoringFiles/PGS004340.txt.gz
PGS000694
(snpnet.SHBG)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 SHBG [nmol/L] sex hormone-binding globulin measurement 19,328
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000694/ScoringFiles/PGS000694.txt.gz - Check Terms/Licenses
PGS002005
(portability-PLR_sitting_height)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sitting height sitting height measurement 118,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002005/ScoringFiles/PGS002005.txt.gz
PGS004408
(X20015.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Sitting height sitting height measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004408/ScoringFiles/PGS004408.txt.gz
Showing 4001 to 4050 of 5221 rows