Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001354
(PRS12_TC)
 PGP000251 |
Song N et al. Cancer Epidemiol Biomarkers Prev (2021)
 Thyroid cancer thyroid gland carcinoma 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001354/ScoringFiles/PGS001354.txt.gz
PGS001353
(PRS6_PD)
 PGP000250 |
Sia MW et al. Mov Disord (2021)
 Parkinson's disease Parkinson disease 6
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001353/ScoringFiles/PGS001353.txt.gz
PGS001352
(MAGICTA_EUR_PGS_HbA1c)
 PGP000246 |
Chen J et al. Nat Genet (2021)
 Glycated haemoglobin levels (HbA1c) HbA1c measurement 1,018,836
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001352/ScoringFiles/PGS001352.txt.gz
PGS001351
(MAGICTA_EUR_PGS_FI)
 PGP000246 |
Chen J et al. Nat Genet (2021)
 Fasting insulin blood insulin amount 1,025,098
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001351/ScoringFiles/PGS001351.txt.gz
PGS001350
(MAGICTA_EUR_PGS_FG)
 PGP000246 |
Chen J et al. Nat Genet (2021)
 Fasting glucose blood glucose amount 1,023,373
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001350/ScoringFiles/PGS001350.txt.gz
PGS001349
(GBE_HC807)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Alzheimer's disease (time-to-event) Alzheimer disease 6
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001349/ScoringFiles/PGS001349.txt.gz
PGS001348
(GBE_HC1584)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Alzheimer's disease (algorithmically-defined) Alzheimer disease 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001348/ScoringFiles/PGS001348.txt.gz
PGS001347
(GBE_FH1263)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Family history of Alzheimer's/dementia family history of Alzheimer’s disease 139
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001347/ScoringFiles/PGS001347.txt.gz
PGS001346
(GBE_HC1036)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Asthma (time-to-event) asthma 8,508
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001346/ScoringFiles/PGS001346.txt.gz
PGS001345
(GBE_BIN22127)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Asthma (diagnosed by doctor) asthma 435
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001345/ScoringFiles/PGS001345.txt.gz
PGS001344
(GBE_BIN_FC4006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Asthma (diagnosed by doctor) asthma 6,139
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001344/ScoringFiles/PGS001344.txt.gz
PGS001343
(GBE_HC1581)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Asthma (algorithmically-defined) asthma 6,425
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001343/ScoringFiles/PGS001343.txt.gz
PGS001341
(GBE_HC382)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Asthma asthma 6,430
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001341/ScoringFiles/PGS001341.txt.gz
PGS001340
(GBE_HC281)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Atrial fibrillation atrial fibrillation 2,955
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001340/ScoringFiles/PGS001340.txt.gz
PGS001339
(GBE_HC964)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Atrial fibrillation and flutter (time-to-event) atrial fibrillation,
atrial flutter		 2,142
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001339/ScoringFiles/PGS001339.txt.gz
PGS001338
(GBE_HC1322)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hyperplasia of prostate (time-to-event) benign prostatic hyperplasia 1,223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001338/ScoringFiles/PGS001338.txt.gz
PGS001337
(GBE_FH1002)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Family history of breast cancer family history of breast cancer 195
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001337/ScoringFiles/PGS001337.txt.gz
PGS001336
(GBE_cancer1002)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Breast cancer breast carcinoma 555
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001336/ScoringFiles/PGS001336.txt.gz
PGS001335
(GBE_BIN_FC4006150)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vascular/heart problems diagnosed by doctor High BP cardiovascular disorder 14,076
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001335/ScoringFiles/PGS001335.txt.gz
PGS001334
(GBE_HC1035)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other chronic obstructive pulmonary disease (time-to-event) chronic obstructive pulmonary disease 498
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001334/ScoringFiles/PGS001334.txt.gz
PGS001333
(GBE_HC1582)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic obstructive pulmonary disease (algorithmically-defined) chronic obstructive pulmonary disease 569
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001333/ScoringFiles/PGS001333.txt.gz
PGS001332
(GBE_HC442)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 482
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001332/ScoringFiles/PGS001332.txt.gz
PGS001331
(GBE_HC322)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Crohn's disease Crohn disease 257
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001331/ScoringFiles/PGS001331.txt.gz
PGS001330
(GBE_HC1101)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Crohn's disease [regional enteritis] (time-to-event) Crohn disease 220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001330/ScoringFiles/PGS001330.txt.gz
PGS001329
(GBE_HC652)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Unspecified diabetes mellitus (time-to-event) diabetes mellitus 2,270
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001329/ScoringFiles/PGS001329.txt.gz
PGS001328
(GBE_FH1220)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Family history of diabetes family history 2,515
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001328/ScoringFiles/PGS001328.txt.gz
PGS001327
(GBE_HC221)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Diabetes diabetes mellitus 4,053
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001327/ScoringFiles/PGS001327.txt.gz
PGS001326
(GBE_HC431)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Emphysema pulmonary emphysema 42
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001326/ScoringFiles/PGS001326.txt.gz
PGS001324
(GBE_FH1065)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Family history of high blood pressure family history 13,862
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001324/ScoringFiles/PGS001324.txt.gz
PGS001323
(GBE_HC882)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Glaucoma (time-to-event) glaucoma 2,066
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001323/ScoringFiles/PGS001323.txt.gz
PGS001322
(GBE_HC276)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Glaucoma glaucoma 655
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001322/ScoringFiles/PGS001322.txt.gz
PGS001321
(GBE_BIN_FC2006148)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Eye problems/disorders (Glaucoma) glaucoma 1,103
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001321/ScoringFiles/PGS001321.txt.gz
PGS001320
(GBE_HC215)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hypertension hypertensive disorder 13,791
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001320/ScoringFiles/PGS001320.txt.gz
PGS001319
(GBE_HC708)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other metabolic disorders (time-to-event) metabolic disease 2
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001319/ScoringFiles/PGS001319.txt.gz
PGS001318
(GBE_HC700)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Disorders of lipoprotein metabolism and other lipidaemias (time-to-event) metabolic disease 7,845
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001318/ScoringFiles/PGS001318.txt.gz
PGS001317
(GBE_BIN_FC1006150)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vascular/heart problems diagnosed by doctor Heart attack myocardial infarction 1,030
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001317/ScoringFiles/PGS001317.txt.gz
PGS001316
(GBE_HC1574)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Myocardial infarction (algorithmically-defined) myocardial infarction 1,831
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001316/ScoringFiles/PGS001316.txt.gz
PGS001315
(GBE_HC326)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Myocardial infarction myocardial infarction 1,788
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001315/ScoringFiles/PGS001315.txt.gz
PGS001314
(GBE_HC938)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Acute myocardial infarction (time-to-event) myocardial infarction 1,108
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001314/ScoringFiles/PGS001314.txt.gz
PGS001313
(GBE_HC1159)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Psoriasis (time-to-event) psoriasis 578
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001313/ScoringFiles/PGS001313.txt.gz
PGS001312
(GBE_HC38)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Psoriasis psoriasis 204
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001312/ScoringFiles/PGS001312.txt.gz
PGS001311
(GBE_HC1211)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Seropositive rheumatoid arthritis (time-to-event) rheumatoid arthritis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001311/ScoringFiles/PGS001311.txt.gz
PGS001310
(GBE_HC430)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 175
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001310/ScoringFiles/PGS001310.txt.gz
PGS001309
(GBE_HC1212)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other rheumatoid arthritis (time-to-event) rheumatoid arthritis 323
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001309/ScoringFiles/PGS001309.txt.gz
PGS001308
(GBE_HC321)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sjogren's syndrome/sicca syndrome Sjogren syndrome 7
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001308/ScoringFiles/PGS001308.txt.gz
PGS001307
(GBE_HC1102)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ulcerative colitis (time-to-event) ulcerative colitis 809
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001307/ScoringFiles/PGS001307.txt.gz
PGS001306
(GBE_HC201)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ulcerative colitis ulcerative colitis 179
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001306/ScoringFiles/PGS001306.txt.gz
PGS001305
(GBE_HC608)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vitamin B12 deficiency induced anemia (time-to-event) anemia,
vitamin B12 deficiency		 121
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001305/ScoringFiles/PGS001305.txt.gz
PGS001304
(GBE_cancer1059)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Melanoma (malignant) melanoma 116
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001304/ScoringFiles/PGS001304.txt.gz
PGS001303
(GBE_HC872)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other cataract (time-to-event) cataract 480
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001303/ScoringFiles/PGS001303.txt.gz
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