Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000832
(T2D-GRS)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 384
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000832/ScoringFiles/PGS000832.txt.gz
PGS002531
(disease_AID_ALL.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Autoimmune disease autoimmune disease 382
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002531/ScoringFiles/PGS002531.txt.gz
PGS002615
(disease_RESPIRATORY_ENT.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Respiratory and ear-nose-throat diseases respiratory system disorder 382
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002615/ScoringFiles/PGS002615.txt.gz
PGS001645
(GBE_INI25490)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA FA in tract anterior thalamic radiation (L) neuroimaging measurement,
brain volume		 379
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001645/ScoringFiles/PGS001645.txt.gz
PGS001767
(GBE_INI25692)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract inferior longitudinal fasciculus (R) neuroimaging measurement,
brain volume		 378
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001767/ScoringFiles/PGS001767.txt.gz
PGS000581
(PRSWEB_PHECODE185_Pca-PRACTICAL_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 377
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000581/ScoringFiles/PGS000581.txt.gz
PGS000582
(PRSWEB_PHECODE185_Pca-PRACTICAL_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 377
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000582/ScoringFiles/PGS000582.txt.gz
PGS003634
(L_CA4_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left CA4 body volume hippocampal CA4 volume 375
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003634/ScoringFiles/PGS003634.txt.gz
PGS000171
(irf)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Immature fraction of reticulocytes reticulocyte count 372
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000171/ScoringFiles/PGS000171.txt.gz
PGS000830
(BMI_PGS_F)
 PGP000210 |
Zubair N et al. Sci Rep (2019)
 Body mass index (BMI) (female) body mass index,
female		 372
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000830/ScoringFiles/PGS000830.txt.gz - Check Terms/Licenses
PGS000375
(PRSWEB_PHECODE153_UKBB-SAIGE-HRC-X153_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Colorectal cancer colorectal cancer 370
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000375/ScoringFiles/PGS000375.txt.gz
PGS000935
(GBE_INI2966)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 High blood pressure, age at diagnosis age at diagnosis,
Increased blood pressure		 370
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000935/ScoringFiles/PGS000935.txt.gz
PGS001577
(GBE_INI25788)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Middle Frontal Gyrus (L) neuroimaging measurement,
grey matter volume measurement		 369
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001577/ScoringFiles/PGS001577.txt.gz
PGS000996
(GBE_HC262)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Diverticular disease/diverticulitis diverticular disease,
diverticulitis		 368
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000996/ScoringFiles/PGS000996.txt.gz
PGS001258
(GBE_HC57)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Radius fracture radius fracture 365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001258/ScoringFiles/PGS001258.txt.gz
PGS001883
(portability-PLR_743.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoporosis osteoporosis 365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001883/ScoringFiles/PGS001883.txt.gz
PGS000537
(PRSWEB_PHECODE174.1_iCOGS-Overall-BRCA_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 363
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000537/ScoringFiles/PGS000537.txt.gz
PGS004590
(PRS363_rand_eff)
 PGP000569 |
Lake J et al. Mol Psychiatry (2023)
 Alzheimer's disease Alzheimer disease 363
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004590/ScoringFiles/PGS004590.txt.gz
PGS002734
(GRS_SBP_362)
 PGP000343 |
Marques-Vidal P et al. J Hypertens (2022)
 Systolic blood pressure systolic blood pressure 362
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002734/ScoringFiles/PGS002734.txt.gz
PGS003012
(ExPRSweb_Hypertension_finngen-R4-I9_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 361
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003012/ScoringFiles/PGS003012.txt.gz
PGS003007
(ExPRSweb_Hypertension_finngen-R4-FG_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 359
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003007/ScoringFiles/PGS003007.txt.gz
PGS001712
(GBE_INI25593)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L1 in tract superior thalamic radiation (R) neuroimaging measurement,
brain volume		 358
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001712/ScoringFiles/PGS001712.txt.gz
PGS001296
(GBE_HC648)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Insulin-dependent diabetes mellitus (time-to-event) type 1 diabetes mellitus 356
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001296/ScoringFiles/PGS001296.txt.gz
PGS001534
(GBE_INI25781)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Total Volume of white matter hyperintensities (from T1 and T2 FLAIR images) neuroimaging measurement,
white matter hyperintensity measurement		 355
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001534/ScoringFiles/PGS001534.txt.gz
PGS003062
(ExPRSweb_Smoking_SmokingInitiation_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Smoking status smoking status measurement 355
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003062/ScoringFiles/PGS003062.txt.gz
PGS003207
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea syndrome 355
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003207/ScoringFiles/PGS003207.txt.gz
PGS003751
(ModelT2D_over45)
 PGP000472 |
Shoaib M et al. Genet Epidemiol (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 354
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003751/ScoringFiles/PGS003751.txt.gz
PGS004132
(pt_clump_nested.CV.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 354
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004132/ScoringFiles/PGS004132.txt.gz
PGS003255
(ExPRSweb_Creatine_eGFRcrea-overall-EA_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine level		 352
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003255/ScoringFiles/PGS003255.txt.gz
PGS001182
(GBE_BIN10030800)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Estradiol [> 212 pmol/L] estradiol measurement 351
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001182/ScoringFiles/PGS001182.txt.gz
PGS003126
(ExPRSweb_Thinness_STILTS-UKHLS_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Thinness body mass index 351
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003126/ScoringFiles/PGS003126.txt.gz
PGS001259
(GBE_HC49)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hayfever/allergic rhinitis seasonal allergic rhinitis 349
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001259/ScoringFiles/PGS001259.txt.gz
PGS003280
(ExPRSweb_CysC_30720-irnt_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 346
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003280/ScoringFiles/PGS003280.txt.gz
PGS003596
(L_GC-ML-DG_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left granule cell and molecular layer of the dentate gyrus body volume dentate gyrus volume 346
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003596/ScoringFiles/PGS003596.txt.gz
PGS001533
(GBE_QT_FC1004803)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Tinnitus severity Tinnitus 343
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001533/ScoringFiles/PGS001533.txt.gz
PGS001423
(GBE_INI25062)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean FA in corticospinal tract on FA skeleton (R) neuroimaging measurement,
brain volume		 342
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001423/ScoringFiles/PGS001423.txt.gz
PGS001763
(GBE_INI25562)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract posterior thalamic radiation (R) neuroimaging measurement,
brain volume		 342
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001763/ScoringFiles/PGS001763.txt.gz
PGS001250
(GBE_HC1304)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Calculus of kidney and ureter (time-to-event) ureterolithiasis,
nephrolithiasis		 341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001250/ScoringFiles/PGS001250.txt.gz
PGS003747
(GRS341_SI)
 PGP000471 |
Tran JH et al. Transl Vis Sci Technol (2023)
 Smoking initiation smoking initiation 341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003747/ScoringFiles/PGS003747.txt.gz
PGS001913
(portability-PLR_F_length_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 339
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001913/ScoringFiles/PGS001913.txt.gz
PGS000505
(PRSWEB_PHECODE174.1_Onco-iCOGS-Overall-BRCA_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 334
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000505/ScoringFiles/PGS000505.txt.gz
PGS000506
(PRSWEB_PHECODE174.1_Onco-iCOGS-Overall-BRCA_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 334
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000506/ScoringFiles/PGS000506.txt.gz
PGS001387
(GBE_INI21058)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Degree bothered by urinary frequency/bladder irritability in the last 3 months health-related quality of life measurement 333
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001387/ScoringFiles/PGS001387.txt.gz
PGS003752
(ModelT2D)
 PGP000472 |
Shoaib M et al. Genet Epidemiol (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 333
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003752/ScoringFiles/PGS003752.txt.gz
PGS000212
(PRS330_LumA)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal A-like) luminal A breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000212/ScoringFiles/PGS000212.txt.gz
PGS000213
(PRS330_LumBHER2neg)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal B/HER2-negative-like) Her2-receptor negative breast cancer 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000213/ScoringFiles/PGS000213.txt.gz
PGS000214
(PRS330_LumB)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal B-like) luminal B breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000214/ScoringFiles/PGS000214.txt.gz
PGS000215
(PRS330_HER2)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (HER2-enriched-like) HER2 positive breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000215/ScoringFiles/PGS000215.txt.gz
PGS000216
(PRS330_TN)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (triple negative) triple-negative breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000216/ScoringFiles/PGS000216.txt.gz
PGS000863
(Cardiovascular)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Cardiovascular disease cardiovascular disorder 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000863/ScoringFiles/PGS000863.txt.gz
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