Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000529
(PRSWEB_PHECODE174.1_iCOGS-ER-positive-BRCA_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 310
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000529/ScoringFiles/PGS000529.txt.gz
PGS001668
(GBE_INI25659)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ICVF in tract corticospinal tract (R) neuroimaging measurement,
brain volume		 310
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001668/ScoringFiles/PGS001668.txt.gz
PGS001535
(GBE_BIN_FC20002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun/uv protection (Sometimes) sun exposure measurement 309
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001535/ScoringFiles/PGS001535.txt.gz
PGS004647
(LDL_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 307
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004647/ScoringFiles/PGS004647.txt.gz
PGS004699
(Non-HLA-GRS)
 PGP000603 |
Loginovic P et al. Nat Commun (2024)
 Multiple sclerosis multiple sclerosis 307
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004699/ScoringFiles/PGS004699.txt.gz
PGS004242
(PRS306_breast)
 PGP000542 |
Kim ES et al. NPJ Precis Oncol (2023)
 Breast cancer breast carcinoma 306
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004242/ScoringFiles/PGS004242.txt.gz
PGS004610
(child_BMI)
 PGP000585 |
Hawkes G et al. Diabetologia (2023)
 Body mass index (BMI) body mass index 306
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004610/ScoringFiles/PGS004610.txt.gz
PGS001718
(GBE_INI25601)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L2 in tract cingulate gyrus part of cingulum (R) neuroimaging measurement,
brain volume		 305
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001718/ScoringFiles/PGS001718.txt.gz
PGS000845
(HDL)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 HDL cholesterol high density lipoprotein cholesterol measurement 303
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000845/ScoringFiles/PGS000845.txt.gz
PGS001632
(GBE_INI25018)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of pallidum (R) neuroimaging measurement,
pallidum volume		 303
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001632/ScoringFiles/PGS001632.txt.gz
PGS004112
(pt_clump.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 301
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004112/ScoringFiles/PGS004112.txt.gz
PGS004113
(pt_clump.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 301
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004113/ScoringFiles/PGS004113.txt.gz
PGS004302
(GenoBoost_colorectal_cancer_2)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Colorectal cancer colorectal carcinoma 300
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004302/ScoringFiles/PGS004302.txt.gz
PGS004925
(PRS300_CHD)
 PGP000660 |
Kim Y et al. J Intern Med (2023)
 Coronary heart disease coronary artery disease 300
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004925/ScoringFiles/PGS004925.txt.gz
PGS000043
(PRS_VTE)
 PGP000030 |
Klarin D et al. Nat Genet (2019)
 Venous thromboembolism venous thromboembolism 297
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000043/ScoringFiles/PGS000043.txt.gz
PGS001768
(GBE_INI25694)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract medial lemniscus (L) neuroimaging measurement,
brain volume		 297
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001768/ScoringFiles/PGS001768.txt.gz
PGS004122
(pt_clump_nested.CV.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 297
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004122/ScoringFiles/PGS004122.txt.gz
PGS005317
(DBP_PRS)
 PGP000766 |
Türkmen D et al. Pharmacogenomics J (2024)
 Diastolic blood pressure diastolic blood pressure 297
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005317/ScoringFiles/PGS005317.txt.gz
PGS000432
(PRSWEB_PHECODE172.1_UKBB-SAIGE-HRC-X172.1_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Melanomas of skin (diagnosis or history) melanoma 296
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000432/ScoringFiles/PGS000432.txt.gz
PGS001746
(GBE_INI25519)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MD in tract cingulate gyrus part of cingulum (L) neuroimaging measurement,
brain volume		 296
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001746/ScoringFiles/PGS001746.txt.gz
PGS000716
(PGS295_elbs)
 PGP000132 |
Richardson TG et al. BMJ (2020)
 Early life body size body mass index,
comparative body size at age 10, self-reported		 295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000716/ScoringFiles/PGS000716.txt.gz
PGS000887
(GLGC_2021_AFR_LDL_PRS_weights_PT)
 PGP000230 |
Graham SE et al. Nature (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000887/ScoringFiles/PGS000887.txt.gz
PGS004173
(t1d_3)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Type 1 diabetes type 1 diabetes mellitus 295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004173/ScoringFiles/PGS004173.txt.gz
PGS002622
(disease_T2D.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 293
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002622/ScoringFiles/PGS002622.txt.gz
PGS003729
(PS_T2D_293-DIAGRAM)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 293
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003729/ScoringFiles/PGS003729.txt.gz
PGS000406
(PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Skin cancer skin carcinoma 292
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000406/ScoringFiles/PGS000406.txt.gz
PGS001807
(portability-PLR_189.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Bladder cancer urinary bladder carcinoma 291
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001807/ScoringFiles/PGS001807.txt.gz
PGS000815
(GRS290_ALP)
 PGP000201 |
Pazoki R et al. Nat Commun (2021)
 Alkaline phosphatase alkaline phosphatase measurement 290
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000815/ScoringFiles/PGS000815.txt.gz
PGS000829
(BMI_PGS_M)
 PGP000210 |
Zubair N et al. Sci Rep (2019)
 Body mass index (BMI) (male) body mass index,
male		 290
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000829/ScoringFiles/PGS000829.txt.gz - Check Terms/Licenses
PGS001716
(GBE_INI25599)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L2 in tract anterior thalamic radiation (R) neuroimaging measurement,
brain volume		 290
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001716/ScoringFiles/PGS001716.txt.gz
PGS003331
(PHS290)
 PGP000397 |
Huynh-Le MP et al. Prostate Cancer Prostatic Dis (2022)
 Prostate cancer prostate carcinoma 290
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003331/ScoringFiles/PGS003331.txt.gz
PGS001568
(GBE_INI25810)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Inferior Temporal Gyrus, posterior division (L) neuroimaging measurement,
grey matter volume measurement		 288
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001568/ScoringFiles/PGS001568.txt.gz
PGS003861
(PRS288_PE)
 PGP000499 |
Zhang Z et al. BMC Med (2023)
 Pulmonary embolism pulmonary embolism 288
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003861/ScoringFiles/PGS003861.txt.gz
PGS000344
(PRS287_BC)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Breast cancer breast carcinoma 287
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000344/ScoringFiles/PGS000344.txt.gz
PGS000346
(PRS287_ERneg)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Estrogen receptor negative breast cancer estrogen-receptor negative breast cancer 287
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000346/ScoringFiles/PGS000346.txt.gz
PGS000347
(PRS287_ERpos)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Estrogen receptor positive breast cancer estrogen-receptor positive breast cancer 287
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000347/ScoringFiles/PGS000347.txt.gz
PGS003353
(GRS_T2D)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003353/ScoringFiles/PGS003353.txt.gz
PGS003730
(PS_T2D_287-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003730/ScoringFiles/PGS003730.txt.gz
PGS003732
(PS_T2D_287-HIS-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003732/ScoringFiles/PGS003732.txt.gz
PGS003733
(PS_T2D_287-EUR-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003733/ScoringFiles/PGS003733.txt.gz
PGS004586
(PPS_CRC)
 PGP000564 |
Xin J et al. Nat Commun (2024)
 Colorectal cancer colorectal carcinoma 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004586/ScoringFiles/PGS004586.txt.gz
PGS002284
(GRS_286_HDL)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 HDL cholesterol high density lipoprotein cholesterol measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002284/ScoringFiles/PGS002284.txt.gz
PGS002285
(GRS_286_LDL)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 LDL cholesterol low density lipoprotein cholesterol measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002285/ScoringFiles/PGS002285.txt.gz
PGS002286
(GRS_286_TC)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 Total cholesterol total cholesterol measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002286/ScoringFiles/PGS002286.txt.gz
PGS002287
(GRS_286_TG)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 Triglyceride triglyceride measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002287/ScoringFiles/PGS002287.txt.gz
PGS003597
(R_GC-ML-DG_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right granule cell and molecular layer of the dentate gyrus head volume dentate gyrus volume 283
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003597/ScoringFiles/PGS003597.txt.gz
PGS003731
(PS_T2D_282-SAS-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 282
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003731/ScoringFiles/PGS003731.txt.gz
PGS002924
(ExPRSweb_FPG_FGovertime-corrected_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Fasting plasma glucose blood glucose amount 281
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002924/ScoringFiles/PGS002924.txt.gz
PGS001164
(GBE_cancer1045)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Testicular cancer testicular carcinoma 280
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001164/ScoringFiles/PGS001164.txt.gz
PGS001815
(portability-PLR_242)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Thyrotoxicosis with or without goiter Thyrotoxicosis 280
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001815/ScoringFiles/PGS001815.txt.gz
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