Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003687
(R_molecular_layer_HP_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right molecular layer hippocampus proper head volume hippocampus molecular layer volume 2,371
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003687/ScoringFiles/PGS003687.txt.gz
PGS003691
(R_molecular_layer_HP_head_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right molecular layer hippocampus proper head volume hippocampus molecular layer volume 20,460
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003691/ScoringFiles/PGS003691.txt.gz
PGS003694
(R_parasubiculum_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right parasubiculum volume parasubiculum volume 35,421
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003694/ScoringFiles/PGS003694.txt.gz
PGS003696
(R_parasubiculum_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right parasubiculum volume parasubiculum volume 73,898
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003696/ScoringFiles/PGS003696.txt.gz
PGS003698
(R_parasubiculum_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right parasubiculum volume parasubiculum volume 1,050
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003698/ScoringFiles/PGS003698.txt.gz
PGS003702
(R_presubiculum_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right presubiculum body volume presubiculum volume 24,030
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003702/ScoringFiles/PGS003702.txt.gz
PGS003706
(R_presubiculum_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right presubiculum body volume presubiculum volume 79,285
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003706/ScoringFiles/PGS003706.txt.gz
PGS003710
(R_presubiculum_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right presubiculum body volume presubiculum volume 19,082
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003710/ScoringFiles/PGS003710.txt.gz
PGS003701
(R_presubiculum_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right presubiculum head volume presubiculum volume 4,398
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003701/ScoringFiles/PGS003701.txt.gz
PGS003705
(R_presubiculum_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right presubiculum head volume presubiculum volume 98
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003705/ScoringFiles/PGS003705.txt.gz
PGS003709
(R_presubiculum_head_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right presubiculum head volume presubiculum volume 40,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003709/ScoringFiles/PGS003709.txt.gz
PGS003713
(R_subiculum_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum body volume subiculum volume 257
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003713/ScoringFiles/PGS003713.txt.gz
PGS003717
(R_subiculum_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum body volume subiculum volume 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003717/ScoringFiles/PGS003717.txt.gz
PGS003721
(R_subiculum_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum body volume subiculum volume 83,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003721/ScoringFiles/PGS003721.txt.gz
PGS003714
(R_subiculum_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 55,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003714/ScoringFiles/PGS003714.txt.gz
PGS003718
(R_subiculum_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 3,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003718/ScoringFiles/PGS003718.txt.gz
PGS003722
(R_subiculum_head_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 51,267
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003722/ScoringFiles/PGS003722.txt.gz
PGS001049
(GBE_BIN2040)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Risk taking behaviour risk-taking behaviour 4,299
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001049/ScoringFiles/PGS001049.txt.gz
PGS000205
(RISK_PC_COGA)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Risk-taking tendency (4-domain principal component model) risk-taking behaviour 1,110,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000205/ScoringFiles/PGS000205.txt.gz
PGS000206
(RISK_PC_FT12)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Risk-taking tendency (4-domain principal component model) risk-taking behaviour 1,098,765
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000206/ScoringFiles/PGS000206.txt.gz
PGS001907
(portability-PLR_ECG_RR_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 RR interval RR interval 1,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001907/ScoringFiles/PGS001907.txt.gz
PGS002121
(portability-ldpred2_ECG_RR_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 RR interval RR interval 616,710
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002121/ScoringFiles/PGS002121.txt.gz
PGS001034
(GBE_QT_FC10001478)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Salt added to food diet measurement 6,651
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001034/ScoringFiles/PGS001034.txt.gz
PGS000922
(GBE_HC170)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sarcoidosis sarcoidosis 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000922/ScoringFiles/PGS000922.txt.gz
PGS001872
(portability-PLR_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001872/ScoringFiles/PGS001872.txt.gz
PGS002084
(portability-ldpred2_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 403,417
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002084/ScoringFiles/PGS002084.txt.gz
PGS000923
(GBE_HC639)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sarcoidosis (time-to-event) sarcoidosis 22
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000923/ScoringFiles/PGS000923.txt.gz
PGS000133
(SCZ_BVU)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 604,645
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000133/ScoringFiles/PGS000133.txt.gz
PGS000134
(SCZ_GHS)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 830,589
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000134/ScoringFiles/PGS000134.txt.gz
PGS000135
(SCZ_MTS)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 972,439
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000135/ScoringFiles/PGS000135.txt.gz
PGS000136
(SCZ_PBK)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 833,502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000136/ScoringFiles/PGS000136.txt.gz
PGS002785
(SCZ_SDPR)
 PGP000370 |
Gui Y et al. Transl Psychiatry (2022)
 Schizophrenia schizophrenia 964,422
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002785/ScoringFiles/PGS002785.txt.gz
PGS001874
(portability-PLR_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 563
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001874/ScoringFiles/PGS001874.txt.gz
PGS002087
(portability-ldpred2_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 206,669
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002087/ScoringFiles/PGS002087.txt.gz
PGS002085
(portability-ldpred2_702.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Seborrheic keratosis seborrheic keratosis 481,233
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002085/ScoringFiles/PGS002085.txt.gz
PGS001140
(GBE_HC1190)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Seborrheic keratosis (time-to-event) seborrheic keratosis 1,368
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001140/ScoringFiles/PGS001140.txt.gz
PGS000143
(GPNoDep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Seen a General Practitioner for nerves, anxiety, tension or depression (without report of low mood or anhedonia) seeing a general practitioner for nerves, anxiety, tension or depression, self-reported 21,042
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000143/ScoringFiles/PGS000143.txt.gz
PGS000141
(Psypsy)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Seen a psychiatrist for nerves, anxiety, tension or depression seeing a psychiatrist for nerves, anxiety, tension or depression, self-reported,
depressive disorder		 22,728
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000141/ScoringFiles/PGS000141.txt.gz
PGS000144
(SelfRepDep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Self-reported depression or depression symptoms depressive symptom measurement,
self-reported trait		 21,828
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000144/ScoringFiles/PGS000144.txt.gz
PGS002004
(portability-PLR_sensitive_stomach)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sensitive stomach health trait 3,970
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002004/ScoringFiles/PGS002004.txt.gz
PGS002223
(portability-ldpred2_sensitive_stomach)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sensitive stomach health trait 795,614
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002223/ScoringFiles/PGS002223.txt.gz
PGS003568
(cont-decay-sensitive_stomach)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Sensitive stomach health trait 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003568/ScoringFiles/PGS003568.txt.gz
PGS001016
(GBE_BIN1950)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sensitivity / hurt feelings feeling emotionally hurt measurement 7,922
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001016/ScoringFiles/PGS001016.txt.gz
PGS002769
(Rheumatoid_arthritis_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Seropositive rheumatoid arthritis rheumatoid arthritis 1,083,565
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002769/ScoringFiles/PGS002769.txt.gz
PGS001311
(GBE_HC1211)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Seropositive rheumatoid arthritis (time-to-event) rheumatoid arthritis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001311/ScoringFiles/PGS001311.txt.gz
PGS000069
(PRS_sEOC)
 PGP000048 |
Yang X et al. J Med Genet (2018)
 Serous epithelial ovarian cancer ovarian serous carcinoma 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000069/ScoringFiles/PGS000069.txt.gz
PGS004747
(creatinine_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 609,027
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004747/ScoringFiles/PGS004747.txt.gz
PGS004748
(creatinine_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 2,653,053
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004748/ScoringFiles/PGS004748.txt.gz
PGS004749
(creatinine_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 1,469,062
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004749/ScoringFiles/PGS004749.txt.gz
PGS004750
(creatinine_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 2,653,053
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004750/ScoringFiles/PGS004750.txt.gz
Showing 4051 to 4100 of 5332 rows