Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000405
(PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PRS-CS_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Skin cancer skin carcinoma 1,119,238
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000405/ScoringFiles/PGS000405.txt.gz
PGS000406
(PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Skin cancer skin carcinoma 292
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000406/ScoringFiles/PGS000406.txt.gz
PGS000407
(PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Skin cancer skin carcinoma 3,166
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000407/ScoringFiles/PGS000407.txt.gz
PGS001041
(GBE_cancer1003)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Skin cancer skin carcinoma 1,298
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001041/ScoringFiles/PGS001041.txt.gz
PGS001803
(portability-PLR_172)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin cancer skin carcinoma 4,371
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001803/ScoringFiles/PGS001803.txt.gz
PGS002014
(portability-ldpred2_172)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin cancer skin carcinoma 534,399
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002014/ScoringFiles/PGS002014.txt.gz
PGS004833
(skin_cancer_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Skin cancer melanoma 807,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004833/ScoringFiles/PGS004833.txt.gz
PGS004834
(skin_cancer_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Skin cancer melanoma 1,271,902
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004834/ScoringFiles/PGS004834.txt.gz
PGS000950
(GBE_HC1171)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Skin changes due to chronic exposure to nonionising radiation (time-to-event) response to radiation 169
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000950/ScoringFiles/PGS000950.txt.gz
PGS001897
(portability-PLR_darker_skin0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin color Abnormality of skin pigmentation 15,817
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001897/ScoringFiles/PGS001897.txt.gz
PGS002110
(portability-ldpred2_darker_skin0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin color Abnormality of skin pigmentation 275,831
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002110/ScoringFiles/PGS002110.txt.gz
PGS003382
(best_SKCM)
 PGP000413 |
Namba S et al. Cancer Res (2022)
 Skin cutaneous melanoma cutaneous melanoma 672
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003382/ScoringFiles/PGS003382.txt.gz
PGS003745
(PRS57_SM)
 PGP000470 |
Xin J et al. EBioMedicine (2023)
 Skin Melanoma cutaneous melanoma 57
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003745/ScoringFiles/PGS003745.txt.gz
PGS003204
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 4,360
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003204/ScoringFiles/PGS003204.txt.gz
PGS003205
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 5,300
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003205/ScoringFiles/PGS003205.txt.gz
PGS003206
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 9,873
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003206/ScoringFiles/PGS003206.txt.gz
PGS003207
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 355
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003207/ScoringFiles/PGS003207.txt.gz
PGS003208
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 12,076
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003208/ScoringFiles/PGS003208.txt.gz
PGS003209
(ExPRSweb_SleepApnea_G6-SLEEPAPNO_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 328,671
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003209/ScoringFiles/PGS003209.txt.gz
PGS003210
(ExPRSweb_SleepApnea_G6-SLEEPAPNO_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 40,992
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003210/ScoringFiles/PGS003210.txt.gz
PGS003211
(ExPRSweb_SleepApnea_G6-SLEEPAPNO_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 39,223
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003211/ScoringFiles/PGS003211.txt.gz
PGS003212
(ExPRSweb_SleepApnea_G6-SLEEPAPNO_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 7,601,206
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003212/ScoringFiles/PGS003212.txt.gz
PGS003213
(ExPRSweb_SleepApnea_G6-SLEEPAPNO_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 1,111,194
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003213/ScoringFiles/PGS003213.txt.gz
PGS003214
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 5,812
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003214/ScoringFiles/PGS003214.txt.gz
PGS003215
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 1,209
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003215/ScoringFiles/PGS003215.txt.gz
PGS003216
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 688
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003216/ScoringFiles/PGS003216.txt.gz
PGS003217
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 46
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003217/ScoringFiles/PGS003217.txt.gz
PGS003218
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 12,097
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003218/ScoringFiles/PGS003218.txt.gz
PGS001150
(GBE_INI1160)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sleep duration sleep duration trait 4,106
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001150/ScoringFiles/PGS001150.txt.gz
PGS001978
(portability-PLR_log_sleep)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleep duration sleep duration trait 40,037
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001978/ScoringFiles/PGS001978.txt.gz
PGS002196
(portability-ldpred2_log_sleep)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleep duration sleep duration trait 927,619
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002196/ScoringFiles/PGS002196.txt.gz
PGS003480
(LDPred2_SleepDuration)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Sleep duration sleep duration trait 850,154
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003480/ScoringFiles/PGS003480.txt.gz
PGS003764
(PRS78_sleep duration)
 PGP000487 |
Scammell BH et al. Hum Mol Genet (2023)
 Sleep duration sleep duration trait 78
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003764/ScoringFiles/PGS003764.txt.gz
PGS001932
(portability-PLR_insomnia)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleeplessness / insomnia insomnia 37,712
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001932/ScoringFiles/PGS001932.txt.gz
PGS002149
(portability-ldpred2_insomnia)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleeplessness / insomnia insomnia 926,585
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002149/ScoringFiles/PGS002149.txt.gz
PGS000964
(GBE_HC176)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Slipped disc Epiphyses, Slipped 47
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000964/ScoringFiles/PGS000964.txt.gz
PGS003369
(GSCAN_SmkCes_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking cessation smoking cessation 1,193,789
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003369/ScoringFiles/PGS003369.txt.gz
PGS003370
(GSCAN_SmkCes_2022_PRS_WEIGHTS_AMR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking cessation smoking cessation 1,109,663
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003370/ScoringFiles/PGS003370.txt.gz
PGS003371
(GSCAN_SmkCes_2022_PRS_WEIGHTS_EAS)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking cessation smoking cessation 859,229
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003371/ScoringFiles/PGS003371.txt.gz
PGS003372
(GSCAN_SmkCes_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking cessation smoking cessation 1,055,802
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003372/ScoringFiles/PGS003372.txt.gz
PGS003357
(GSCAN_SmkInit_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking initiation smoking initiation 1,194,472
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003357/ScoringFiles/PGS003357.txt.gz
PGS003358
(GSCAN_SmkInit_2022_PRS_WEIGHTS_AMR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking initiation smoking initiation 1,109,850
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003358/ScoringFiles/PGS003358.txt.gz
PGS003359
(GSCAN_SmkInit_2022_PRS_WEIGHTS_EAS)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking initiation smoking initiation 859,206
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003359/ScoringFiles/PGS003359.txt.gz
PGS003360
(GSCAN_SmkInit_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking initiation smoking initiation 1,055,915
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003360/ScoringFiles/PGS003360.txt.gz
PGS003747
(GRS341_SI)
 PGP000471 |
Tran JH et al. Transl Vis Sci Technol (2023)
 Smoking initiation smoking initiation 341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003747/ScoringFiles/PGS003747.txt.gz
PGS002348
(cov_SMOKING_STATUS.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Smoking status smoking status measurement 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002348/ScoringFiles/PGS002348.txt.gz
PGS002375
(cov_SMOKING_STATUS.BOLT-LMM-BBJ)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Smoking status smoking status measurement 920,934
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002375/ScoringFiles/PGS002375.txt.gz
PGS002420
(cov_SMOKING_STATUS.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Smoking status smoking status measurement 3,874
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002420/ScoringFiles/PGS002420.txt.gz
PGS002469
(cov_SMOKING_STATUS.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Smoking status smoking status measurement 17,774
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002469/ScoringFiles/PGS002469.txt.gz
PGS002518
(cov_SMOKING_STATUS.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Smoking status smoking status measurement 106,902
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002518/ScoringFiles/PGS002518.txt.gz
Showing 4101 to 4150 of 5296 rows