Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002587
(cov_EDU_COLLEGE.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 College education educational attainment 514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002587/ScoringFiles/PGS002587.txt.gz
PGS002636
(cov_EDU_COLLEGE.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 College education educational attainment 577,448
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002636/ScoringFiles/PGS002636.txt.gz
PGS002319
(cov_EDU_COLLEGE.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 College education educational attainment 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002319/ScoringFiles/PGS002319.txt.gz
PGS001126
(GBE_INI1498)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Coffee intake coffee consumption measurement 3,154
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001126/ScoringFiles/PGS001126.txt.gz
PGS001125
(GBE_BIN_FC20001508)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Coffee consumption (instant coffee) coffee consumption measurement 432
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001125/ScoringFiles/PGS001125.txt.gz
PGS001124
(GBE_BIN_FC30001508)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Coffee consumption (ground coffee) coffee consumption measurement 9,694
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001124/ScoringFiles/PGS001124.txt.gz
PGS001123
(GBE_BIN100240)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Coffee consumption coffee consumption measurement 48
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001123/ScoringFiles/PGS001123.txt.gz
PGS000042
(GRS-DQ2.5-CeD-imputed)
 PGP000029 |
Abraham G et al. Genome Med (2015)
 Coeliac disease celiac disease 3,317
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000042/ScoringFiles/PGS000042.txt.gz
PGS000040
(GRS_CeD)
 PGP000028 |
Abraham G et al. PLoS Genet (2014)
 Coeliac disease celiac disease 228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000040/ScoringFiles/PGS000040.txt.gz
PGS000041
(GRS-DQ2.5-CeD)
 PGP000029 |
Abraham G et al. Genome Med (2015)
 Coeliac disease celiac disease 2,513
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000041/ScoringFiles/PGS000041.txt.gz
PGS000316
(GRS42_Coeliac)
 PGP000093 |
Sharp SA et al. Aliment Pharmacol Ther (2020)
 Coeliac disease celiac disease 53
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000316/ScoringFiles/PGS000316.txt.gz
PGS001777
(3-SNP_cirr)
 PGP000258 |
Whitfield JB et al. J Hepatol (2021)
 Cirrhosis (alcohol related) alcoholic liver cirrhosis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001777/ScoringFiles/PGS001777.txt.gz
PGS004621
(cirrhosis_pgs_eur)
 PGP000594 |
Ghouse J et al. Nat Genet (2024)
 Cirrhosis cirrhosis of liver 1,089,806
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004621/ScoringFiles/PGS004621.txt.gz
PGS000776
(GRS9_Cirr)
 PGP000180 |
Innes H et al. Gastroenterology (2020)
 Cirrhosis cirrhosis of liver 9
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000776/ScoringFiles/PGS000776.txt.gz
PGS000726
(PGS12_CIR)
 PGP000136 |
Emdin CA et al. Gastroenterology (2020)
 Cirrhosis cirrhosis of liver 12
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000726/ScoringFiles/PGS000726.txt.gz
PGS002059
(portability-ldpred2_459.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Circulatory disease NEC vascular disease 604,572
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002059/ScoringFiles/PGS002059.txt.gz
PGS001847
(portability-PLR_459.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Circulatory disease NEC vascular disease 594
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001847/ScoringFiles/PGS001847.txt.gz
PGS003368
(GSCAN_CigDay_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Cigarettes smoked per day cigarettes per day measurement 1,055,811
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003368/ScoringFiles/PGS003368.txt.gz
PGS003367
(GSCAN_CigDay_2022_PRS_WEIGHTS_EAS)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Cigarettes smoked per day cigarettes per day measurement 858,414
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003367/ScoringFiles/PGS003367.txt.gz
PGS003366
(GSCAN_CigDay_2022_PRS_WEIGHTS_AMR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Cigarettes smoked per day cigarettes per day measurement 1,112,206
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003366/ScoringFiles/PGS003366.txt.gz
PGS003365
(GSCAN_CigDay_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Cigarettes smoked per day cigarettes per day measurement 1,196,168
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003365/ScoringFiles/PGS003365.txt.gz
PGS003748
(GRS46_CPD)
 PGP000471 |
Tran JH et al. Transl Vis Sci Technol (2023)
 Cigarettes smoked per day cigarettes per day measurement 46
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003748/ScoringFiles/PGS003748.txt.gz
PGS002586
(other_MORNINGPERSON.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 255
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002586/ScoringFiles/PGS002586.txt.gz
PGS002390
(other_MORNINGPERSON.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 3,625
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002390/ScoringFiles/PGS002390.txt.gz
PGS002488
(other_MORNINGPERSON.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 103,314
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002488/ScoringFiles/PGS002488.txt.gz
PGS002684
(other_MORNINGPERSON.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 977,159
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002684/ScoringFiles/PGS002684.txt.gz
PGS002537
(other_MORNINGPERSON.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 562
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002537/ScoringFiles/PGS002537.txt.gz
PGS002439
(other_MORNINGPERSON.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 16,590
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002439/ScoringFiles/PGS002439.txt.gz
PGS002635
(other_MORNINGPERSON.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 404,978
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002635/ScoringFiles/PGS002635.txt.gz
PGS002318
(other_MORNINGPERSON.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Chronotype (morning person) chronotype measurement 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002318/ScoringFiles/PGS002318.txt.gz
PGS001055
(GBE_QT_FC1001180)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronotype (morning/evening person) chronotype measurement 11,428
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001055/ScoringFiles/PGS001055.txt.gz
PGS000336
(GRS313_Chron)
 PGP000103 |
Maukonen M et al. J Biol Rhythms (2020)
 Chronotype chronotype measurement 313
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000336/ScoringFiles/PGS000336.txt.gz
PGS001272
(GBE_HC1302)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic renal failure (time-to-event) chronic kidney disease 158
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001272/ScoringFiles/PGS001272.txt.gz
PGS001333
(GBE_HC1582)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic obstructive pulmonary disease (algorithmically-defined) chronic obstructive pulmonary disease 569
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001333/ScoringFiles/PGS001333.txt.gz
PGS001332
(GBE_HC442)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 482
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001332/ScoringFiles/PGS001332.txt.gz
PGS001788
(1kgeur_gbmi_leaveUKBBout_COPD_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 910,082
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001788/ScoringFiles/PGS001788.txt.gz
PGS001783
(1kgeur_gbmi_COPD_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 884,139
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001783/ScoringFiles/PGS001783.txt.gz
PGS002305
(PRS43_CLL)
 PGP000328 |
Choi J et al. Int J Cancer (2020)
 Chronic lymphoid leukemia lymphoid leukemia 43
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002305/ScoringFiles/PGS002305.txt.gz
PGS000651
(PRSWEB_PHECODE204.12_UKBB-SAIGE-HRC-X204.12_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 76
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000651/ScoringFiles/PGS000651.txt.gz
PGS000650
(PRSWEB_PHECODE204.12_UKBB-SAIGE-HRC-X204.12_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000650/ScoringFiles/PGS000650.txt.gz
PGS000874
(PRS41_CLL)
 PGP000220 |
Kleinstern G et al. Blood (2018)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 41
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000874/ScoringFiles/PGS000874.txt.gz
PGS003453
(PRS43_CLL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 43
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003453/ScoringFiles/PGS003453.txt.gz
PGS000648
(PRSWEB_PHECODE204.12_GWAS-Catalog-r2019-05-03-X204.12_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 44
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000648/ScoringFiles/PGS000648.txt.gz
PGS000646
(PRSWEB_PHECODE204.12_GWAS-Catalog-r2019-05-03-X204.12_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 32
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000646/ScoringFiles/PGS000646.txt.gz
PGS000647
(PRSWEB_PHECODE204.12_GWAS-Catalog-r2019-05-03-X204.12_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 32
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000647/ScoringFiles/PGS000647.txt.gz
PGS000649
(PRSWEB_PHECODE204.12_GWAS-Catalog-r2019-05-03-X204.12_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000649/ScoringFiles/PGS000649.txt.gz
PGS005090
(CKD_PRS_AA)
 PGP000683 |
Jones AC et al. J Am Soc Nephrol (2024)
 Chronic kidney disease (stage 3 or higher) chronic kidney disease 1,142,436
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005090/ScoringFiles/PGS005090.txt.gz
PGS002237
(GPS_CKD)
 PGP000269 |
Khan A et al. Nat Med (2022)
 Chronic kidney disease (stage 3 or greater) chronic kidney disease 471,316
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002237/ScoringFiles/PGS002237.txt.gz
PGS003988
(dbslmm.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,141,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003988/ScoringFiles/PGS003988.txt.gz
PGS004045
(ldpred2.CV.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,050,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004045/ScoringFiles/PGS004045.txt.gz
Showing 4251 to 4300 of 5221 rows