Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004642
(LDL_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 8,643
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004642/ScoringFiles/PGS004642.txt.gz
PGS004659
(logTG_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,722,077
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004659/ScoringFiles/PGS004659.txt.gz
PGS004665
(logTG_SAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004665/ScoringFiles/PGS004665.txt.gz
PGS004641
(LDL_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004641/ScoringFiles/PGS004641.txt.gz
PGS004638
(LDL_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,683,941
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004638/ScoringFiles/PGS004638.txt.gz
PGS004658
(logTG_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,192,539
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004658/ScoringFiles/PGS004658.txt.gz
PGS004651
(LDL_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004651/ScoringFiles/PGS004651.txt.gz
PGS004676
(TC_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004676/ScoringFiles/PGS004676.txt.gz
PGS004627
(HDL_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 54,812
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004627/ScoringFiles/PGS004627.txt.gz
PGS004656
(logTG_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004656/ScoringFiles/PGS004656.txt.gz
PGS004636
(HDL_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004636/ScoringFiles/PGS004636.txt.gz
PGS004644
(LDL_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,354,681
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004644/ScoringFiles/PGS004644.txt.gz
PGS004671
(TC_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004671/ScoringFiles/PGS004671.txt.gz
PGS004694
(prostate_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Prostate cancer prostate carcinoma 1,016,708
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004694/ScoringFiles/PGS004694.txt.gz
PGS004689
(colorectal_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Colorectal cancer colorectal carcinoma 1,077,789
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004689/ScoringFiles/PGS004689.txt.gz
PGS004687
(bladder_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Bladder cancer urinary bladder carcinoma 1,077,775
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004687/ScoringFiles/PGS004687.txt.gz
PGS004691
(lung_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Lung cancer lung carcinoma 950,353
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004691/ScoringFiles/PGS004691.txt.gz
PGS004693
(pancreatic_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Pancreatic cancer pancreatic carcinoma 6,351,686
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004693/ScoringFiles/PGS004693.txt.gz
PGS004692
(ovarian_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Ovarian cancer ovarian carcinoma 6,385,666
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004692/ScoringFiles/PGS004692.txt.gz
PGS004688
(breast_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Breast cancer breast carcinoma 1,044,110
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004688/ScoringFiles/PGS004688.txt.gz
PGS004690
(kidney_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Kidney cancer renal carcinoma 6,351,669
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004690/ScoringFiles/PGS004690.txt.gz
PGS004695
(PRS23_IPF)
 PGP000598 |
Wang X et al. Chemosphere (2023)
 Idiopathic pulmonary fibrosis idiopathic pulmonary fibrosis 23
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004695/ScoringFiles/PGS004695.txt.gz
PGS004698
(multi_anc_hg37PT)
 PGP000602 |
Smith JL et al. Circ Genom Precis Med (2024)
 Coronary heart disease coronary artery disease 542,218
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004698/ScoringFiles/PGS004698.txt.gz
PGS004697
(eur_anc_hg37CSx)
 PGP000602 |
Smith JL et al. Circ Genom Precis Med (2024)
 Coronary heart disease coronary artery disease 1,120,251
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004697/ScoringFiles/PGS004697.txt.gz
PGS004696
(multi_anc_hg37CSx)
 PGP000602 |
Smith JL et al. Circ Genom Precis Med (2024)
 Coronary heart disease coronary artery disease 1,289,980
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004696/ScoringFiles/PGS004696.txt.gz
PGS004699
(Non-HLA-GRS)
 PGP000603 |
Loginovic P et al. Nat Commun (2024)
 Multiple sclerosis multiple sclerosis 307
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004699/ScoringFiles/PGS004699.txt.gz
PGS004700
(HLA-GRS)
 PGP000603 |
Loginovic P et al. Nat Commun (2024)
 Multiple sclerosis multiple sclerosis 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004700/ScoringFiles/PGS004700.txt.gz
PGS004809
(osteoporosis_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Osteoporosis osteoporosis 863,731
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004809/ScoringFiles/PGS004809.txt.gz
PGS004827
(RDW_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red cell distribution width Red cell distribution width 4,698,860
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004827/ScoringFiles/PGS004827.txt.gz
PGS004781
(height_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Height body height 3,220,389
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004781/ScoringFiles/PGS004781.txt.gz
PGS004753
(current_smoker_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 5,469,505
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004753/ScoringFiles/PGS004753.txt.gz
PGS004745
(cad_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Coronary artery disease coronary artery disease 4,769,577
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004745/ScoringFiles/PGS004745.txt.gz
PGS004771
(Hct_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hematocrit hematocrit 594,293
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004771/ScoringFiles/PGS004771.txt.gz
PGS004851
(TotalProtein_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Total protein measurement total blood protein measurement 593,738
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004851/ScoringFiles/PGS004851.txt.gz
PGS004751
(current_smoker_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 1,076,735
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004751/ScoringFiles/PGS004751.txt.gz
PGS004830
(sbp_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 4,805,129
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004830/ScoringFiles/PGS004830.txt.gz
PGS004775
(hdl_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,120,830
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004775/ScoringFiles/PGS004775.txt.gz
PGS004703
(a1c_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 HbA1c HbA1c measurement 3,872,159
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004703/ScoringFiles/PGS004703.txt.gz
PGS004820
(RA_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Rheumatoid Arthritis rheumatoid arthritis 6,580,837
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004820/ScoringFiles/PGS004820.txt.gz
PGS004770
(Hb_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hemoglobin hemoglobin measurement 3,913,042
-
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004770/ScoringFiles/PGS004770.txt.gz
PGS004819
(RA_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Rheumatoid Arthritis rheumatoid arthritis 2,624,228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004819/ScoringFiles/PGS004819.txt.gz
PGS004772
(hct_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hematocrit hematocrit 1,259,662
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004772/ScoringFiles/PGS004772.txt.gz
PGS004747
(creatinine_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Serum creatinine serum creatinine amount 609,027
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004747/ScoringFiles/PGS004747.txt.gz
PGS004839
(t2d_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 4,594,694
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004839/ScoringFiles/PGS004839.txt.gz
PGS004722
(AST_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Aspartate aminotransferase level aspartate aminotransferase measurement 868,009
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004722/ScoringFiles/PGS004722.txt.gz
PGS004735
(bmi_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Body mass index (BMI) body mass index 4,536,322
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004735/ScoringFiles/PGS004735.txt.gz
PGS004831
(sbp_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 3,827,774
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004831/ScoringFiles/PGS004831.txt.gz
PGS004829
(sbp_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 1,194,211
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004829/ScoringFiles/PGS004829.txt.gz
PGS004789
(hypothyroid_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hypothyroidism hypothyroidism 1,109,333
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004789/ScoringFiles/PGS004789.txt.gz
PGS004849
(Total_protein_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Total protein measurement total blood protein measurement 2,167,123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004849/ScoringFiles/PGS004849.txt.gz
Showing 4601 to 4650 of 5221 rows