Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002700
(disease_HI_CHOL_SELF_REP.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 High cholesterol Hypercholesterolemia 937,601
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002700/ScoringFiles/PGS002700.txt.gz
PGS004850
(Total_protein_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Total protein measurement total blood protein measurement 937,777
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004850/ScoringFiles/PGS004850.txt.gz
PGS002217
(portability-ldpred2_play_computer)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Plays computer games lifestyle measurement 938,047
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002217/ScoringFiles/PGS002217.txt.gz
PGS019706
(TPMI_724_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Other and unspecified disorders of back Abnormality of the vertebral column 939,653
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019706/ScoringFiles/PGS019706.txt.gz
PGS019774
(TPMI_796_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Elevated prostate specific antigen PSA prostate specific antigen amount 939,689
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019774/ScoringFiles/PGS019774.txt.gz
PGS019820
(TPMI_HbA1c_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Glycated hemoglobin HbA1c measurement 939,718
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019820/ScoringFiles/PGS019820.txt.gz
PGS019818
(TPMI_FG_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Fasting glucose glucose measurement 939,736
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019818/ScoringFiles/PGS019818.txt.gz
PGS019814
(TPMI_T-BIL_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Total bilirubin bilirubin measurement 939,739
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019814/ScoringFiles/PGS019814.txt.gz
PGS018807
(TPMI_272.12_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Hyperglyceridemia familial lipoprotein lipase deficiency 939,771
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018807/ScoringFiles/PGS018807.txt.gz
PGS019834
(TPMI_UA_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Uric acid, blood uric acid measurement 939,771
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019834/ScoringFiles/PGS019834.txt.gz
PGS019824
(TPMI_HR_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Heart rate heart rate 939,772
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019824/ScoringFiles/PGS019824.txt.gz
PGS019822
(TPMI_HDL-C_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 HDL cholesterol LDL cholesterol 939,781
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019822/ScoringFiles/PGS019822.txt.gz
PGS019062
(TPMI_371.1_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Uveitis noninfectious or NOS uveitis 939,787
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019062/ScoringFiles/PGS019062.txt.gz
PGS019784
(TPMI_947_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Urticaria urticaria 939,787
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019784/ScoringFiles/PGS019784.txt.gz
PGS019827
(TPMI_PLT_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Platelet count platelet count 939,791
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019827/ScoringFiles/PGS019827.txt.gz
PGS018551
(TPMI_180.3_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cervical intraepithelial neoplasia CIN Cervical dysplasia cervical intraepithelial neoplasia 939,793
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018551/ScoringFiles/PGS018551.txt.gz
PGS019816
(TPMI_BUN_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Blood urea nitrogen blood urea nitrogen amount 939,793
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019816/ScoringFiles/PGS019816.txt.gz
PGS018531
(TPMI_174.1_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Breast cancer female breast cancer 939,795
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018531/ScoringFiles/PGS018531.txt.gz
PGS019812
(TPMI_AST_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Serum glutamic oxaloacetic transaminase aspartate aminotransferase measurement 939,795
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019812/ScoringFiles/PGS019812.txt.gz
PGS019819
(TPMI_HB_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Hemoglobin hemoglobin measurement 939,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019819/ScoringFiles/PGS019819.txt.gz
PGS018425
(TPMI_070.2_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Viral hepatitis B hepatitis B virus infection 939,797
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018425/ScoringFiles/PGS018425.txt.gz
PGS019072
(TPMI_379.5_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Disorders of iris and ciliary body eye disorder 939,798
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019072/ScoringFiles/PGS019072.txt.gz
PGS019624
(TPMI_696.42_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Psoriatic arthropathy psoriatic arthritis 939,799
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019624/ScoringFiles/PGS019624.txt.gz
PGS018536
(TPMI_174.11_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Malignant neoplasm of female breast female breast carcinoma 939,800
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018536/ScoringFiles/PGS018536.txt.gz
PGS019835
(TPMI_WBC_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 White blood cell count leukocyte quantity 939,802
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019835/ScoringFiles/PGS019835.txt.gz
PGS018451
(TPMI_110.13_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Dermatophytosis of the body dermatophytosis 939,803
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018451/ScoringFiles/PGS018451.txt.gz
PGS019316
(TPMI_526_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diseases of the jaws jaw disease 939,803
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019316/ScoringFiles/PGS019316.txt.gz
PGS019321
(TPMI_526.4_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Temporomandibular joint disorders temporomandibular joint disorder 939,803
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019321/ScoringFiles/PGS019321.txt.gz
PGS018420
(TPMI_070_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Viral hepatitis viral hepatitis 939,805
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018420/ScoringFiles/PGS018420.txt.gz
PGS018541
(TPMI_180_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cervical cancer and dysplasia cervical cancer 939,805
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018541/ScoringFiles/PGS018541.txt.gz
PGS019042
(TPMI_365.1_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Open angle glaucoma open-angle glaucoma 939,805
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019042/ScoringFiles/PGS019042.txt.gz
PGS019594
(TPMI_695.4_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Lupus localized and systemic systemic lupus erythematosus 939,805
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019594/ScoringFiles/PGS019594.txt.gz
PGS019600
(TPMI_695.42_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Systemic lupus erythematosus systemic lupus erythematosus 939,805
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019600/ScoringFiles/PGS019600.txt.gz
PGS019266
(TPMI_472_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Chronic pharyngitis and nasopharyngitis pharyngitis 939,806
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019266/ScoringFiles/PGS019266.txt.gz
PGS019612
(TPMI_696.4_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Psoriasis psoriasis 939,806
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019612/ScoringFiles/PGS019612.txt.gz
PGS019286
(TPMI_495.1_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Chronic obstructive asthma Chronic Obstructive Asthma 939,808
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019286/ScoringFiles/PGS019286.txt.gz
PGS019832
(TPMI_TC_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Total cholesterol total cholesterol measurement 939,809
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019832/ScoringFiles/PGS019832.txt.gz
PGS019646
(TPMI_709.2_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Sicca syndrome Sjogren syndrome 939,810
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019646/ScoringFiles/PGS019646.txt.gz
PGS018741
(TPMI_250.7_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diabetic retinopathy diabetic retinopathy 939,811
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018741/ScoringFiles/PGS018741.txt.gz
PGS019640
(TPMI_709_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diffuse diseases of connective tissue connective tissue disorder 939,811
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019640/ScoringFiles/PGS019640.txt.gz
PGS019833
(TPMI_TG_LDPred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Triglycerides triglyceride measurement 939,811
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019833/ScoringFiles/PGS019833.txt.gz
PGS018526
(TPMI_174_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Breast cancer breast cancer 939,812
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018526/ScoringFiles/PGS018526.txt.gz
PGS018972
(TPMI_327.7_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Sleep related movement disorders movement disorder 939,812
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018972/ScoringFiles/PGS018972.txt.gz
PGS019176
(TPMI_414_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Other forms of chronic heart disease chronic pulmonary heart disease 939,813
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019176/ScoringFiles/PGS019176.txt.gz
PGS019533
(TPMI_610.1_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Cystic mastopathy breast fibrocystic disease 939,813
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019533/ScoringFiles/PGS019533.txt.gz
PGS019588
(TPMI_695_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Erythematous conditions skin disorder 939,813
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019588/ScoringFiles/PGS019588.txt.gz
PGS018735
(TPMI_250.6_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Polyneuropathy in diabetes diabetic neuropathy 939,815
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018735/ScoringFiles/PGS018735.txt.gz
PGS018696
(TPMI_245.2_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Chronic thyroiditis Hashimoto thyroiditis 939,816
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018696/ScoringFiles/PGS018696.txt.gz
PGS018765
(TPMI_250.24_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Type 2 diabetes with neurological manifestations type 2 diabetes mellitus 939,817
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018765/ScoringFiles/PGS018765.txt.gz
PGS018771
(TPMI_250.25_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diabetes type 2 with peripheral circulatory disorders type 2 diabetes mellitus 939,817
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018771/ScoringFiles/PGS018771.txt.gz
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