Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS005092
(PGS_prscsx)
 PGP000684 |
Abramowitz SA et al. JAMA (2024)
 Coronary artery disease coronary artery disease 1,279,502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005092/ScoringFiles/PGS005092.txt.gz
PGS004956
(Hemoglobin_Mean_INT_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004956/ScoringFiles/PGS004956.txt.gz
PGS004957
(Hemoglobin_Mean_INT_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004957/ScoringFiles/PGS004957.txt.gz
PGS004958
(Hemoglobin_Mean_INT_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004958/ScoringFiles/PGS004958.txt.gz
PGS004959
(Hemoglobin_Mean_INT_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004959/ScoringFiles/PGS004959.txt.gz
PGS004960
(Hemoglobin_Mean_INT_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004960/ScoringFiles/PGS004960.txt.gz
PGS004961
(Hemoglobin_Mean_INT_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004961/ScoringFiles/PGS004961.txt.gz
PGS004969
(LDLC_Mean_INT_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004969/ScoringFiles/PGS004969.txt.gz
PGS004970
(LDLC_Mean_INT_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004970/ScoringFiles/PGS004970.txt.gz
PGS004971
(LDLC_Mean_INT_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004971/ScoringFiles/PGS004971.txt.gz
PGS004972
(LDLC_Mean_INT_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004972/ScoringFiles/PGS004972.txt.gz
PGS004973
(LDLC_Mean_INT_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004973/ScoringFiles/PGS004973.txt.gz
PGS004974
(LDLC_Mean_INT_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004974/ScoringFiles/PGS004974.txt.gz
PGS004982
(mean_BMI_INT_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Body mass index (BMI) body mass index 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004982/ScoringFiles/PGS004982.txt.gz
PGS004983
(mean_BMI_INT_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Body mass index (BMI) body mass index 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004983/ScoringFiles/PGS004983.txt.gz
PGS004984
(mean_BMI_INT_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Body mass index (BMI) body mass index 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004984/ScoringFiles/PGS004984.txt.gz
PGS004985
(mean_BMI_INT_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Body mass index (BMI) body mass index 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004985/ScoringFiles/PGS004985.txt.gz
PGS004986
(mean_BMI_INT_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Body mass index (BMI) body mass index 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004986/ScoringFiles/PGS004986.txt.gz
PGS004987
(mean_BMI_INT_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Body mass index (BMI) body mass index 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004987/ScoringFiles/PGS004987.txt.gz
PGS004995
(mean_Height_INT_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Height body height 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004995/ScoringFiles/PGS004995.txt.gz
PGS004996
(mean_Height_INT_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Height body height 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004996/ScoringFiles/PGS004996.txt.gz
PGS004997
(mean_Height_INT_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Height body height 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004997/ScoringFiles/PGS004997.txt.gz
PGS004998
(mean_Height_INT_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Height body height 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004998/ScoringFiles/PGS004998.txt.gz
PGS004999
(mean_Height_INT_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Height body height 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004999/ScoringFiles/PGS004999.txt.gz
PGS005000
(mean_Height_INT_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Height body height 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005000/ScoringFiles/PGS005000.txt.gz
PGS005008
(mean_Systolic_INT_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Systolic blood pressure systolic blood pressure 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005008/ScoringFiles/PGS005008.txt.gz
PGS005009
(mean_Systolic_INT_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Systolic blood pressure systolic blood pressure 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005009/ScoringFiles/PGS005009.txt.gz
PGS005010
(mean_Systolic_INT_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Systolic blood pressure systolic blood pressure 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005010/ScoringFiles/PGS005010.txt.gz
PGS005011
(mean_Systolic_INT_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Systolic blood pressure systolic blood pressure 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005011/ScoringFiles/PGS005011.txt.gz
PGS005012
(mean_Systolic_INT_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Systolic blood pressure systolic blood pressure 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005012/ScoringFiles/PGS005012.txt.gz
PGS005013
(mean_Systolic_INT_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Systolic blood pressure systolic blood pressure 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005013/ScoringFiles/PGS005013.txt.gz
PGS005021
(Phe_250_2_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Type 2 diabetes (T2D) (PheCode 250.2) type 2 diabetes mellitus 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005021/ScoringFiles/PGS005021.txt.gz
PGS005022
(Phe_250_2_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Type 2 diabetes (T2D) (PheCode 250.2) type 2 diabetes mellitus 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005022/ScoringFiles/PGS005022.txt.gz
PGS005023
(Phe_250_2_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Type 2 diabetes (T2D) (PheCode 250.2) type 2 diabetes mellitus 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005023/ScoringFiles/PGS005023.txt.gz
PGS005024
(Phe_250_2_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Type 2 diabetes (T2D) (PheCode 250.2) type 2 diabetes mellitus 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005024/ScoringFiles/PGS005024.txt.gz
PGS005025
(Phe_250_2_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Type 2 diabetes (T2D) (PheCode 250.2) type 2 diabetes mellitus 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005025/ScoringFiles/PGS005025.txt.gz
PGS005026
(Phe_250_2_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Type 2 diabetes (T2D) (PheCode 250.2) type 2 diabetes mellitus 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005026/ScoringFiles/PGS005026.txt.gz
PGS005034
(Phe_411_2_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Myocardial infarction (PheCode 411.2) myocardial infarction 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005034/ScoringFiles/PGS005034.txt.gz
PGS005035
(Phe_411_2_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Myocardial infarction (PheCode 411.2) myocardial infarction 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005035/ScoringFiles/PGS005035.txt.gz
PGS005036
(Phe_411_2_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Myocardial infarction (PheCode 411.2) myocardial infarction 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005036/ScoringFiles/PGS005036.txt.gz
PGS005037
(Phe_411_2_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Myocardial infarction (PheCode 411.2) myocardial infarction 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005037/ScoringFiles/PGS005037.txt.gz
PGS005038
(Phe_411_2_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Myocardial infarction (PheCode 411.2) myocardial infarction 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005038/ScoringFiles/PGS005038.txt.gz
PGS005039
(Phe_411_2_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Myocardial infarction (PheCode 411.2) myocardial infarction 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005039/ScoringFiles/PGS005039.txt.gz
PGS005047
(Phe_411_3_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005047/ScoringFiles/PGS005047.txt.gz
PGS005048
(Phe_411_3_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005048/ScoringFiles/PGS005048.txt.gz
PGS005049
(Phe_411_3_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005049/ScoringFiles/PGS005049.txt.gz
PGS005050
(Phe_411_3_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005050/ScoringFiles/PGS005050.txt.gz
PGS005051
(Phe_411_3_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005051/ScoringFiles/PGS005051.txt.gz
PGS005052
(Phe_411_3_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005052/ScoringFiles/PGS005052.txt.gz
PGS005060
(Phe_427_21_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Atrial fibrillation (PheCode 427.21) atrial fibrillation 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005060/ScoringFiles/PGS005060.txt.gz
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