Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002054
(portability-ldpred2_442.11)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal aortic aneurysm abdominal aortic aneurysm 592,187
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002054/ScoringFiles/PGS002054.txt.gz
PGS002053
(portability-ldpred2_433)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cerebrovascular disease cerebrovascular disorder 599,726
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002053/ScoringFiles/PGS002053.txt.gz
PGS002052
(portability-ldpred2_433.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Occlusion and stenosis of precerebral arteries occlusion precerebral artery 490,459
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002052/ScoringFiles/PGS002052.txt.gz
PGS002051
(portability-ldpred2_428)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Congestive heart failure; nonhypertensive congestive heart failure 642,241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002051/ScoringFiles/PGS002051.txt.gz
PGS002050
(portability-ldpred2_427.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Atrial fibrillation and flutter atrial fibrillation,
atrial flutter		 554,908
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002050/ScoringFiles/PGS002050.txt.gz
PGS002049
(portability-ldpred2_415)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulmonary heart disease cor pulmonale 222,371
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002049/ScoringFiles/PGS002049.txt.gz
PGS002048
(portability-ldpred2_411.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Coronary atherosclerosis coronary atherosclerosis 762,124
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002048/ScoringFiles/PGS002048.txt.gz
PGS002047
(portability-ldpred2_401)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 918,325
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002047/ScoringFiles/PGS002047.txt.gz
PGS002046
(portability-ldpred2_383)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Otosclerosis otosclerosis 570,308
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002046/ScoringFiles/PGS002046.txt.gz
PGS002045
(portability-ldpred2_371)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Inflammation of the eye eye inflammation,
eye disorder		 527,030
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002045/ScoringFiles/PGS002045.txt.gz
PGS002044
(portability-ldpred2_366)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cataract cataract 711,169
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002044/ScoringFiles/PGS002044.txt.gz
PGS002043
(portability-ldpred2_365)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glaucoma glaucoma 672,952
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002043/ScoringFiles/PGS002043.txt.gz
PGS002042
(portability-ldpred2_364.5)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Corneal dystrophy corneal dystrophy 59,944
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002042/ScoringFiles/PGS002042.txt.gz
PGS002041
(portability-ldpred2_362.29)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Macular degeneration (senile) of retina NOS age-related macular degeneration 116,538
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002041/ScoringFiles/PGS002041.txt.gz
PGS002040
(portability-ldpred2_361)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Retinal detachments and defects retinal detachment 706,872
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002040/ScoringFiles/PGS002040.txt.gz
PGS002039
(portability-ldpred2_351)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other peripheral nerve disorders peripheral nervous system disorder 799,326
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002039/ScoringFiles/PGS002039.txt.gz
PGS002038
(portability-ldpred2_335)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Multiple sclerosis multiple sclerosis 129,077
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002038/ScoringFiles/PGS002038.txt.gz
PGS002037
(portability-ldpred2_318)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Tobacco use disorder nicotine dependence 847,691
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002037/ScoringFiles/PGS002037.txt.gz
PGS002036
(portability-ldpred2_296.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Depression depressive disorder 807,338
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002036/ScoringFiles/PGS002036.txt.gz
PGS002035
(portability-ldpred2_290.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Dementia dementia 39,752
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002035/ScoringFiles/PGS002035.txt.gz
PGS002034
(portability-ldpred2_286.12)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Congenital deficiency of other clotting factors (including factor VII) congenital vitamin K-dependent coagulation factors deficiency 32,552
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002034/ScoringFiles/PGS002034.txt.gz
PGS002033
(portability-ldpred2_278)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Overweight, obesity and other hyperalimentation overweight body mass index status,
overnutrition,
obesity disorder		 846,292
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002033/ScoringFiles/PGS002033.txt.gz
PGS002032
(portability-ldpred2_277.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Disorders of bilirubin excretion bilirubin metabolism disease 19,768
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002032/ScoringFiles/PGS002032.txt.gz
PGS002031
(portability-ldpred2_275.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Disorders of iron metabolism iron metabolism disease 6,713
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002031/ScoringFiles/PGS002031.txt.gz
PGS002030
(portability-ldpred2_274.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Gout gout 163,210
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002030/ScoringFiles/PGS002030.txt.gz
PGS002029
(portability-ldpred2_272)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Disorders of lipoid metabolism Abnormal circulating lipid concentration 764,390
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002029/ScoringFiles/PGS002029.txt.gz
PGS002028
(portability-ldpred2_251.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hypoglycemia Hypoglycemia 170,554
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002028/ScoringFiles/PGS002028.txt.gz
PGS002027
(portability-ldpred2_250.7)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diabetic retinopathy diabetic retinopathy 389,029
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002027/ScoringFiles/PGS002027.txt.gz
PGS002026
(portability-ldpred2_250.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 830,783
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002026/ScoringFiles/PGS002026.txt.gz
PGS002025
(portability-ldpred2_250.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 106,800
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002025/ScoringFiles/PGS002025.txt.gz
PGS002024
(portability-ldpred2_244)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hypothyroidism hypothyroidism 632,597
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002024/ScoringFiles/PGS002024.txt.gz
PGS002023
(portability-ldpred2_242)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Thyrotoxicosis with or without goiter thyrotoxicosis 279,385
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002023/ScoringFiles/PGS002023.txt.gz
PGS002022
(portability-ldpred2_241.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Nontoxic multinodular goiter multinodular goiter,
nontoxic goiter		 375,470
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002022/ScoringFiles/PGS002022.txt.gz
PGS002021
(portability-ldpred2_218)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Benign neoplasm of uterus uterine benign neoplasm 547,617
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002021/ScoringFiles/PGS002021.txt.gz
PGS002020
(portability-ldpred2_211)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Benign neoplasm of other parts of digestive system benign digestive system neoplasm 503,832
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002020/ScoringFiles/PGS002020.txt.gz
PGS002019
(portability-ldpred2_208)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Benign neoplasm of colon benign colon neoplasm 667,546
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002019/ScoringFiles/PGS002019.txt.gz
PGS002018
(portability-ldpred2_193)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Thyroid cancer thyroid gland carcinoma 311,520
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002018/ScoringFiles/PGS002018.txt.gz
PGS002017
(portability-ldpred2_189.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Bladder cancer urinary bladder carcinoma 510,453
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002017/ScoringFiles/PGS002017.txt.gz
PGS002016
(portability-ldpred2_185)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Prostate cancer prostate carcinoma 450,963
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002016/ScoringFiles/PGS002016.txt.gz
PGS002015
(portability-ldpred2_174.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Breast cancer (female) breast carcinoma 488,608
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002015/ScoringFiles/PGS002015.txt.gz
PGS002014
(portability-ldpred2_172)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin cancer skin carcinoma 534,399
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002014/ScoringFiles/PGS002014.txt.gz
PGS002013
(portability-ldpred2_153)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Colorectal cancer colorectal cancer 648,559
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002013/ScoringFiles/PGS002013.txt.gz
PGS002012
(portability-PLR_years_of_edu)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Qualifications (years of education) educational attainment 50,413
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002012/ScoringFiles/PGS002012.txt.gz
PGS002011
(portability-PLR_water_intake)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Water intake drinking behavior 43,709
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002011/ScoringFiles/PGS002011.txt.gz
PGS002010
(portability-PLR_urate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urate urate measurement 75,102
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002010/ScoringFiles/PGS002010.txt.gz
PGS002009
(portability-PLR_systolic_BP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Systolic blood pressure, automated reading systolic blood pressure 68,449
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002009/ScoringFiles/PGS002009.txt.gz
PGS002008
(portability-PLR_sphered_cell_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean sphered cell volume hematological measurement 50,360
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002008/ScoringFiles/PGS002008.txt.gz
PGS002007
(portability-PLR_sodium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sodium in urine sodium measurement 37,568
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002007/ScoringFiles/PGS002007.txt.gz
PGS002006
(portability-PLR_snoring)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Snoring snoring measurement 33,917
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002006/ScoringFiles/PGS002006.txt.gz
PGS002005
(portability-PLR_sitting_height)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sitting height sitting height measurement 118,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002005/ScoringFiles/PGS002005.txt.gz
Showing 5001 to 5050 of 6982 rows