Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000282
(SCF)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Stem cell factor (SCF) serum levels blood protein amount 552,420
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000282/ScoringFiles/PGS000282.txt.gz
PGS000283
(SPON1)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Spondin-1 (SPON1) serum levels blood protein amount 552,703
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000283/ScoringFiles/PGS000283.txt.gz
PGS000284
(ST2)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 ST2 protein (ST2) serum levels blood protein amount 552,006
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000284/ScoringFiles/PGS000284.txt.gz
PGS000285
(TF)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Tissue factor (TF) serum levels blood protein amount 552,228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000285/ScoringFiles/PGS000285.txt.gz
PGS000286
(TM)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Thrombomodulin (TM) serum levels blood protein amount 552,241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000286/ScoringFiles/PGS000286.txt.gz
PGS000287
(TNF-R1)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Tumor necrosis factor receptor 1 (TNF-R1) serum levels blood protein amount 552,317
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000287/ScoringFiles/PGS000287.txt.gz
PGS000288
(TNF-R2)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Tumor necrosis factor receptor 2 (TNF-R2) serum levels blood protein amount 552,185
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000288/ScoringFiles/PGS000288.txt.gz
PGS000289
(TNFSF14)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Tumor necrosis factor ligand superfamily member 14 (TNFSF14) serum levels blood protein amount 552,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000289/ScoringFiles/PGS000289.txt.gz
PGS000290
(TRAIL)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 TNF-related apoptosis-inducing ligand (TRAIL) serum levels blood protein amount 552,279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000290/ScoringFiles/PGS000290.txt.gz
PGS000291
(TRAIL-R2)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 TNF-related apoptosis-inducing ligand receptor 2 (TRAIL-R2) serum levels blood protein amount 552,198
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000291/ScoringFiles/PGS000291.txt.gz
PGS000292
(TRANCE)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 TNF-related activation-induced cytokine (TRANCE) serum levels blood protein amount 552,090
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000292/ScoringFiles/PGS000292.txt.gz
PGS000293
(U-PAR)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Urokinase plasminogen activator surface receptor (U-PAR) serum levels blood protein amount 552,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000293/ScoringFiles/PGS000293.txt.gz
PGS000294
(VEGF-A)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Vascular endothelial growth factor A (VEGF-A) serum levels blood protein amount 552,070
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000294/ScoringFiles/PGS000294.txt.gz
PGS000295
(VEGF-D)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Vascular endothelial growth factor D (VEGF-D) serum levels blood protein amount 551,905
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000295/ScoringFiles/PGS000295.txt.gz
PGS000212
(PRS330_LumA)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal A-like) luminal A breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000212/ScoringFiles/PGS000212.txt.gz
PGS000213
(PRS330_LumBHER2neg)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal B/HER2-negative-like) Her2-receptor negative breast cancer 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000213/ScoringFiles/PGS000213.txt.gz
PGS000214
(PRS330_LumB)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (luminal B-like) luminal B breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000214/ScoringFiles/PGS000214.txt.gz
PGS000215
(PRS330_HER2)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (HER2-enriched-like) HER2 positive breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000215/ScoringFiles/PGS000215.txt.gz
PGS000216
(PRS330_TN)
 PGP000088 |
Zhang H et al. Nat Genet (2020)
 Breast cancer intrinsic-like subtype (triple negative) triple-negative breast carcinoma 330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000216/ScoringFiles/PGS000216.txt.gz
PGS000211
(PD19)
 PGP000087 |
Pihlstrøm L et al. Mov Disord (2016)
 Parkinson's disease Parkinson disease 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000211/ScoringFiles/PGS000211.txt.gz
PGS000210
(LF279)
 PGP000086 |
Shrine N et al. Nat Genet (2019)
 Lung function (FEV1/FVC) FEV/FVC ratio 279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000210/ScoringFiles/PGS000210.txt.gz
PGS000207
(TC10_Ohio)
 PGP000085 |
Liyanarachchi S et al. Proc Natl Acad Sci U S A (2020)
 Thyroid cancer thyroid gland carcinoma 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000207/ScoringFiles/PGS000207.txt.gz
PGS000208
(TC10_Iceland)
 PGP000085 |
Liyanarachchi S et al. Proc Natl Acad Sci U S A (2020)
 Thyroid cancer thyroid gland carcinoma 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000208/ScoringFiles/PGS000208.txt.gz
PGS000209
(TC10_UKB)
 PGP000085 |
Liyanarachchi S et al. Proc Natl Acad Sci U S A (2020)
 Thyroid cancer thyroid gland carcinoma 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000209/ScoringFiles/PGS000209.txt.gz
PGS000201
(PROB_ALC_COGA)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Problematic alcohol use alcohol dependence measurement 1,094,954
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000201/ScoringFiles/PGS000201.txt.gz
PGS000202
(PROB_ALC_FT12)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Problematic alcohol use alcohol dependence measurement 1,083,002
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000202/ScoringFiles/PGS000202.txt.gz
PGS000203
(GSCAN_DPW_COGA)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Alcohol consumption (drinks per week) alcohol consumption quality 1,110,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000203/ScoringFiles/PGS000203.txt.gz
PGS000204
(GSCAN_DPW_FT12)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Alcohol consumption (drinks per week) alcohol consumption quality 1,099,480
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000204/ScoringFiles/PGS000204.txt.gz
PGS000205
(RISK_PC_COGA)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Risk-taking tendency (4-domain principal component model) risk-taking behaviour 1,110,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000205/ScoringFiles/PGS000205.txt.gz
PGS000206
(RISK_PC_FT12)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Risk-taking tendency (4-domain principal component model) risk-taking behaviour 1,098,765
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000206/ScoringFiles/PGS000206.txt.gz
PGS000200
(GRS28)
 PGP000082 |
Tikkanen E et al. Arterioscler Thromb Vasc Biol (2013)
 Coronary heart disease coronary artery disorder 28
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000200/ScoringFiles/PGS000200.txt.gz
PGS000194
(G-PROB_Rapos)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Rheumatoid arthritis (CCP-negative) ACPA-positive rheumatoid arthritis 114
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000194/ScoringFiles/PGS000194.txt.gz
PGS000195
(G-PROB_Raneg)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Rheumatoid arthritis (CCP-negative) ACPA-negative rheumatoid arthritis 96
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000195/ScoringFiles/PGS000195.txt.gz
PGS000196
(G-PROB_SLE)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Systemic lupus erythematosus systemic lupus erythematosus 55
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000196/ScoringFiles/PGS000196.txt.gz
PGS000197
(G-PROB_SpA)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Spondyloarthroparthy spondyloarthropathy 31
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000197/ScoringFiles/PGS000197.txt.gz
PGS000198
(G-PROB_PsA)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Psoriatic arthritis psoriatic arthritis 31
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000198/ScoringFiles/PGS000198.txt.gz
PGS000199
(G-PROB_Gout)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Gout gout 29
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000199/ScoringFiles/PGS000199.txt.gz
PGS000193
(MDD_0.001_Coleman_2020)
 PGP000080 |
Coleman JRI et al. Mol Psychiatry (2020)
 Major depression major depressive disorder 1,138
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000193/ScoringFiles/PGS000193.txt.gz
PGS000192
(GS9)
 PGP000079 |
Kathiresan S et al. N Engl J Med (2008)
 Cholesterol low density lipoprotein cholesterol measurement,
high density lipoprotein cholesterol measurement		 9
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000192/ScoringFiles/PGS000192.txt.gz
PGS000163
(baso)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Basophil count basophil count 185
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000163/ScoringFiles/PGS000163.txt.gz
PGS000164
(baso_p)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Basophil percentage of white cells basophil percentage of leukocytes 150
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000164/ScoringFiles/PGS000164.txt.gz
PGS000165
(eo)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Eosinophil count eosinophil count 607
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000165/ScoringFiles/PGS000165.txt.gz
PGS000166
(eo_p)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Eosinophil percentage of white cells eosinophil percentage of leukocytes 571
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000166/ScoringFiles/PGS000166.txt.gz
PGS000167
(hct)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Hematocrit hematocrit 502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000167/ScoringFiles/PGS000167.txt.gz
PGS000168
(hgb)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Hemoglobin concentration hemoglobin measurement 515
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000168/ScoringFiles/PGS000168.txt.gz
PGS000169
(hlr)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 High light scatter reticulocyte count reticulocyte count 570
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000169/ScoringFiles/PGS000169.txt.gz
PGS000170
(hlr_p)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 High light scatter reticulocyte percentage of red cells reticulocyte count 566
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000170/ScoringFiles/PGS000170.txt.gz
PGS000171
(irf)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Immature fraction of reticulocytes reticulocyte count 372
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000171/ScoringFiles/PGS000171.txt.gz
PGS000172
(lymph)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Lymphocyte count lymphocyte count 621
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000172/ScoringFiles/PGS000172.txt.gz
PGS000173
(lymph_p)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Lymphocyte percentage of white cells lymphocyte percentage of leukocytes 472
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000173/ScoringFiles/PGS000173.txt.gz
Showing 5101 to 5150 of 5332 rows