Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002227
(portability-ldpred2_sphered_cell_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean sphered cell volume hematological measurement 630,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002227/ScoringFiles/PGS002227.txt.gz
PGS002228
(portability-ldpred2_systolic_BP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Systolic blood pressure, automated reading systolic blood pressure 937,030
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002228/ScoringFiles/PGS002228.txt.gz
PGS002229
(portability-ldpred2_urate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urate urate measurement 698,001
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002229/ScoringFiles/PGS002229.txt.gz
PGS002230
(portability-ldpred2_water_intake)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Water intake drinking behavior 930,461
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002230/ScoringFiles/PGS002230.txt.gz
PGS002231
(portability-ldpred2_years_of_edu)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Qualifications (years of education) educational attainment 950,845
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002231/ScoringFiles/PGS002231.txt.gz
PGS001782
(1kgeur_gbmi_Asthma_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Asthma asthma 884,043
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001782/ScoringFiles/PGS001782.txt.gz
PGS001783
(1kgeur_gbmi_COPD_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 884,139
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001783/ScoringFiles/PGS001783.txt.gz
PGS001784
(1kgeur_gbmi_leaveUKBBout_AAA_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Abdominal aortic aneurysm abdominal aortic aneurysm 911,440
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001784/ScoringFiles/PGS001784.txt.gz
PGS001785
(1kgeur_gbmi_leaveUKBBout_AcApp_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Acute appendicitis appendicitis 911,334
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001785/ScoringFiles/PGS001785.txt.gz
PGS001786
(1kgeur_gbmi_leaveUKBBout_Appendectomy_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Appendectomy appendectomy 899,660
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001786/ScoringFiles/PGS001786.txt.gz
PGS001787
(1kgeur_gbmi_leaveUKBBout_Asthma_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Asthma asthma 909,990
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001787/ScoringFiles/PGS001787.txt.gz
PGS001788
(1kgeur_gbmi_leaveUKBBout_COPD_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 910,082
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001788/ScoringFiles/PGS001788.txt.gz
PGS001789
(1kgeur_gbmi_leaveUKBBout_Gout_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Gout gout 910,151
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001789/ScoringFiles/PGS001789.txt.gz
PGS001790
(1kgeur_gbmi_leaveUKBBout_HF_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Heart failure heart failure 910,146
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001790/ScoringFiles/PGS001790.txt.gz
PGS001791
(1kgeur_gbmi_leaveUKBBout_IPF_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Idiopathic pulmonary fibrosis idiopathic pulmonary fibrosis 910,439
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001791/ScoringFiles/PGS001791.txt.gz
PGS001792
(1kgeur_gbmi_leaveUKBBout_POAG_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Primary open-angle glaucoma glaucoma 911,402
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001792/ScoringFiles/PGS001792.txt.gz
PGS001793
(1kgeur_gbmi_leaveUKBBout_Stroke_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Stroke stroke disorder 910,099
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001793/ScoringFiles/PGS001793.txt.gz
PGS001794
(1kgeur_gbmi_leaveUKBBout_ThC_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Thyroid cancer thyroid gland carcinoma 911,462
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001794/ScoringFiles/PGS001794.txt.gz
PGS001795
(1kgeur_gbmi_leaveUKBBout_UtC_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Uterine cancer uterine carcinoma 911,692
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001795/ScoringFiles/PGS001795.txt.gz
PGS001796
(1kgeur_gbmi_leaveUKBBout_VTE_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Venous thromboembolism venous thromboembolism 910,337
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001796/ScoringFiles/PGS001796.txt.gz
PGS001797
(1kgeur_gbmi_POAG_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Primary open-angle glaucoma open-angle glaucoma 885,417
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001797/ScoringFiles/PGS001797.txt.gz
PGS001798
(1kgeur_gbmi_Stroke_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Stroke stroke disorder 884,168
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001798/ScoringFiles/PGS001798.txt.gz
PGS001799
(1kgeur_gbmi_ThC_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Thyroid cancer thyroid gland carcinoma 885,482
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001799/ScoringFiles/PGS001799.txt.gz
PGS001780
(CHD_PRSCS)
 PGP000261 |
Tamlander M et al. Commun Biol (2022)
 Coronary heart disease coronary artery disorder 1,090,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001780/ScoringFiles/PGS001780.txt.gz
PGS001781
(T2D_PRSCS)
 PGP000261 |
Tamlander M et al. Commun Biol (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,091,673
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001781/ScoringFiles/PGS001781.txt.gz
PGS001779
(BRSprs)
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Brugada syndrome Brugada syndrome 21
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001779/ScoringFiles/PGS001779.txt.gz
PGS001778
(PRS15_BC)
 PGP000259 |
Yiangou K et al. Cancers (Basel) (2021)
 Breast cancer breast carcinoma 15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001778/ScoringFiles/PGS001778.txt.gz
PGS001777
(3-SNP_cirr)
 PGP000258 |
Whitfield JB et al. J Hepatol (2021)
 Cirrhosis (alcohol related) alcoholic liver cirrhosis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001777/ScoringFiles/PGS001777.txt.gz
PGS001776
(PRS45_CC)
 PGP000256 |
Gafni A et al. PLoS One (2021)
 Colorectal cancer colorectal cancer 45
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001776/ScoringFiles/PGS001776.txt.gz
PGS001775
(PRS39_AD)
 PGP000255 |
Ebenau JL et al. Alzheimers Dement (Amst) (2021)
 Alzheimer's disease Alzheimer disease 39
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001775/ScoringFiles/PGS001775.txt.gz
PGS001774
(PRS12_PD)
 PGP000254 |
Chairta PP et al. Genes (Basel) (2021)
 Parkinson's disease Parkinson disease 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001774/ScoringFiles/PGS001774.txt.gz
PGS001773
(PRS_atopicDermatitis)
 PGP000253 |
Simard M et al. J Allergy Clin Immunol (2020)
 Moderate-to-severe atopic dermatitis atopic eczema 25
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001773/ScoringFiles/PGS001773.txt.gz
PGS001355
(CAD_AnnoPred_PRS)
 PGP000252 |
Ye Y et al. Circ Genom Precis Med (2021)
 Coronary artery disease coronary artery disorder 2,994,055
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001355/ScoringFiles/PGS001355.txt.gz
PGS001356
(AF_AnnoPred_PRS)
 PGP000252 |
Ye Y et al. Circ Genom Precis Med (2021)
 Atrial fibrillation atrial fibrillation 2,996,793
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001356/ScoringFiles/PGS001356.txt.gz
PGS001357
(T2D_AnnoPred_PRS)
 PGP000252 |
Ye Y et al. Circ Genom Precis Med (2021)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 2,996,761
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001357/ScoringFiles/PGS001357.txt.gz
PGS001354
(PRS12_TC)
 PGP000251 |
Song N et al. Cancer Epidemiol Biomarkers Prev (2021)
 Thyroid cancer thyroid gland carcinoma 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001354/ScoringFiles/PGS001354.txt.gz
PGS001353
(PRS6_PD)
 PGP000250 |
Sia MW et al. Mov Disord (2021)
 Parkinson's disease Parkinson disease 6
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001353/ScoringFiles/PGS001353.txt.gz
PGS001350
(MAGICTA_EUR_PGS_FG)
 PGP000246 |
Chen J et al. Nat Genet (2021)
 Fasting glucose blood glucose amount 1,023,373
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001350/ScoringFiles/PGS001350.txt.gz
PGS001351
(MAGICTA_EUR_PGS_FI)
 PGP000246 |
Chen J et al. Nat Genet (2021)
 Fasting insulin blood insulin amount 1,025,098
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001351/ScoringFiles/PGS001351.txt.gz
PGS001352
(MAGICTA_EUR_PGS_HbA1c)
 PGP000246 |
Chen J et al. Nat Genet (2021)
 Glycated haemoglobin levels (HbA1c) HbA1c measurement 1,018,836
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001352/ScoringFiles/PGS001352.txt.gz
PGS000922
(GBE_HC170)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sarcoidosis sarcoidosis 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000922/ScoringFiles/PGS000922.txt.gz
PGS000923
(GBE_HC639)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sarcoidosis (time-to-event) sarcoidosis 22
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000923/ScoringFiles/PGS000923.txt.gz
PGS000924
(GBE_HC702)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Disorders of porphyrin and bilirubin metabolism (time-to-event) bilirubin metabolism disease,
porphyrin metabolism disease		 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000924/ScoringFiles/PGS000924.txt.gz
PGS000925
(GBE_HC1020)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Unspecified acute lower respiratory infection (time-to-event) respiratory tract infectious disorder 402
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000925/ScoringFiles/PGS000925.txt.gz
PGS000926
(GBE_QT_FC1001220)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Daytime dozing / sleeping (narcolepsy) narcolepsy 4,194
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000926/ScoringFiles/PGS000926.txt.gz
PGS000927
(GBE_HC1158)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other dermatitis (time-to-event) dermatitis 242
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000927/ScoringFiles/PGS000927.txt.gz
PGS000928
(GBE_HC644)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other non-toxic goitre (time-to-event) nontoxic goiter 170
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000928/ScoringFiles/PGS000928.txt.gz
PGS000929
(GBE_HC1583)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 All-cause dementia (algorithmically-defined) dementia 6
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000929/ScoringFiles/PGS000929.txt.gz
PGS000930
(GBE_BIN_FC3006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Blood clot (diagnosed by doctor) thrombotic disease 118
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000930/ScoringFiles/PGS000930.txt.gz
PGS000931
(GBE_BIN_FC11006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Blood clot or deep vein thrombosis (diagnosed by doctor) deep vein thrombosis,
thrombotic disease		 534
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000931/ScoringFiles/PGS000931.txt.gz
Showing 5251 to 5300 of 6982 rows