Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003937
(INI30130)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Monocyte count monocyte count 13,415
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003937/ScoringFiles/PGS003937.txt.gz
PGS002866
(ExPRSweb_CRP_30710-irnt_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 13,371
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002866/ScoringFiles/PGS002866.txt.gz
PGS003703
(L_presubiculum_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left presubiculum head volume presubiculum volume 13,326
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003703/ScoringFiles/PGS003703.txt.gz
PGS002900
(ExPRSweb_DBP_94-irnt_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Diastolic blood pressure diastolic blood pressure 13,289
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002900/ScoringFiles/PGS002900.txt.gz
PGS000987
(GBE_INI30260)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean reticulocyte volume mean reticulocyte volume 13,277
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000987/ScoringFiles/PGS000987.txt.gz
PGS001529
(GBE_INI3146)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Speed of sound through heel heel bone mineral density 13,172
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001529/ScoringFiles/PGS001529.txt.gz
PGS018490
(TPMI_153.2_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Colon cancer malignant colon neoplasm 13,140
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018490/ScoringFiles/PGS018490.txt.gz
PGS003999
(lassosum.auto.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 13,086
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003999/ScoringFiles/PGS003999.txt.gz
PGS002433
(disease_AID_ALL.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Autoimmune disease autoimmune disease 13,075
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002433/ScoringFiles/PGS002433.txt.gz
PGS003699
(L_presubiculum_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left presubiculum head volume presubiculum volume 13,044
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003699/ScoringFiles/PGS003699.txt.gz
PGS000999
(GBE_QT_FC1001687)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Comparative body size at age 10 comparative body size at age 10, self-reported 13,034
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000999/ScoringFiles/PGS000999.txt.gz
PGS001825
(portability-PLR_278)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Overweight, obesity and other hyperalimentation overweight body mass index status,
overnutrition,
obesity disorder		 13,009
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001825/ScoringFiles/PGS001825.txt.gz
PGS001219
(GBE_INI30050)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean corpuscular hemoglobin mean corpuscular hemoglobin 13,003
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001219/ScoringFiles/PGS001219.txt.gz
PGS000673
(snpnet.Aspartate_aminotransferase)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Aspartate aminotransferase [U/L] aspartate aminotransferase measurement 12,829
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000673/ScoringFiles/PGS000673.txt.gz - Check Terms/Licenses
PGS002562
(blood_PLATELET_COUNT.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Platelet count platelet count 12,742
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002562/ScoringFiles/PGS002562.txt.gz
PGS004662
(logTG_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 12,717
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004662/ScoringFiles/PGS004662.txt.gz
PGS003767
(HDL_EUR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 12,656
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003767/ScoringFiles/PGS003767.txt.gz
PGS002831
(ExPRSweb_Alcohol_DrinksPerWeek_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption quality 12,650
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002831/ScoringFiles/PGS002831.txt.gz
PGS002398
(lung_FEV1FVCzSMOKE.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 FEV1/FVC ratio FEV/FVC ratio 12,645
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002398/ScoringFiles/PGS002398.txt.gz
PGS001120
(GBE_INI47)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Right hand grip strength grip strength measurement 12,644
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001120/ScoringFiles/PGS001120.txt.gz
PGS019800
(TPMI_HR_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Heart rate heart rate 12,582
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019800/ScoringFiles/PGS019800.txt.gz
PGS001172
(GBE_INI30150)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Eosinophil count eosinophil count 12,579
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001172/ScoringFiles/PGS001172.txt.gz
PGS001076
(GBE_INI30210)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Eosinophil percentage eosinophil percentage of leukocytes 12,563
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001076/ScoringFiles/PGS001076.txt.gz
PGS003931
(INI30070)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Red blood cell (erythrocyte) distribution width Red cell distribution width 12,557
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003931/ScoringFiles/PGS003931.txt.gz
PGS003635
(R_CA4_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right CA4 head volume hippocampal CA4 volume 12,506
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003635/ScoringFiles/PGS003635.txt.gz
PGS000692
(snpnet.Phosphate)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Phosphate [mmol/L] phosphate measurement 12,448
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000692/ScoringFiles/PGS000692.txt.gz - Check Terms/Licenses
PGS000701
(snpnet.Urea)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Urea [mmol/L] serum urea amount 12,351
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000701/ScoringFiles/PGS000701.txt.gz - Check Terms/Licenses
PGS000676
(snpnet.Calcium)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Calcium [mmol/L] calcium measurement 12,334
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000676/ScoringFiles/PGS000676.txt.gz - Check Terms/Licenses
PGS001127
(GBE_BIN_FC10020116)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Never Smoker smoking status measurement 12,310
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001127/ScoringFiles/PGS001127.txt.gz
PGS000532
(PRSWEB_PHECODE174.1_iCOGS-ER-positive-BRCA_LASSOSUM_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 12,277
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000532/ScoringFiles/PGS000532.txt.gz
PGS019539
(TPMI_611.3_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Lump or mass in breast breast neoplasm 12,220
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019539/ScoringFiles/PGS019539.txt.gz
PGS003600
(L_GC-ML-DG_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left granule cell and molecular layer of the dentate gyrus body volume dentate gyrus volume 12,211
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003600/ScoringFiles/PGS003600.txt.gz
PGS019788
(TPMI_AST_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Serum glutamic oxaloacetic transaminase aspartate aminotransferase measurement 12,139
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019788/ScoringFiles/PGS019788.txt.gz
PGS005281
(PRS12111_height)
 PGP000755 |
Ramírez-Luzuriaga MJ et al. Hum Mol Genet (2024)
 Height body height 12,111
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005281/ScoringFiles/PGS005281.txt.gz
PGS019255
(TPMI_452_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Other venous embolism and thrombosis deep vein thrombosis 12,101
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019255/ScoringFiles/PGS019255.txt.gz
PGS003023
(ExPRSweb_Hypertension_finngen-R4-FG_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 12,097
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003023/ScoringFiles/PGS003023.txt.gz
PGS003028
(ExPRSweb_Hypertension_finngen-R4-I9_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 12,097
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003028/ScoringFiles/PGS003028.txt.gz
PGS003218
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea syndrome 12,097
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003218/ScoringFiles/PGS003218.txt.gz
PGS000668
(snpnet.Alanine_aminotransferase)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Alanine aminotransferase [U/L] serum alanine aminotransferase amount 12,076
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000668/ScoringFiles/PGS000668.txt.gz - Check Terms/Licenses
PGS003008
(ExPRSweb_Hypertension_finngen-R4-FG_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 12,076
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003008/ScoringFiles/PGS003008.txt.gz
PGS003013
(ExPRSweb_Hypertension_finngen-R4-I9_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 12,076
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003013/ScoringFiles/PGS003013.txt.gz
PGS003208
(ExPRSweb_SleepApnea_finngen-R4-G6-SLEEPAPNO_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea syndrome 12,076
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003208/ScoringFiles/PGS003208.txt.gz
PGS003957
(AD_Kunkle)
 PGP000503 |
Sofer T et al. Alzheimers Res Ther (2023)
 Alzheimer's disease Alzheimer disease 12,002
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003957/ScoringFiles/PGS003957.txt.gz
PGS019679
(TPMI_716_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Other arthropathies arthropathy 11,934
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019679/ScoringFiles/PGS019679.txt.gz
PGS000669
(snpnet.Albumin)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Albumin [g/L] serum albumin amount 11,912
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000669/ScoringFiles/PGS000669.txt.gz - Check Terms/Licenses
PGS002403
(biochemistry_HbA1c.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 HbA1c HbA1c measurement 11,872
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002403/ScoringFiles/PGS002403.txt.gz
PGS000100
(mchc)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Mean corpuscular hemoglobin concentration mean corpuscular hemoglobin concentration 11,832
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000100/ScoringFiles/PGS000100.txt.gz
PGS002421
(bp_SYSTOLICadjMEDz.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Systolic blood pressure systolic blood pressure 11,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002421/ScoringFiles/PGS002421.txt.gz
PGS019804
(TPMI_PP_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Pulse pressure pulse pressure measurement 11,690
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019804/ScoringFiles/PGS019804.txt.gz
PGS003307
(ExPRSweb_CysC_CKDGen-1000Genomes-DiscoveryMeta-eGFRcys_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate		 11,672
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003307/ScoringFiles/PGS003307.txt.gz
Showing 4351 to 4400 of 6972 rows