Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS018876
(TPMI_280.2_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Iron deficiency anemia secondary to blood loss chronic Iron deficiency anemia 7,519
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018876/ScoringFiles/PGS018876.txt.gz
PGS000020
(dGRS1000)
 PGP000010 |
Läll K et al. Genet Med (2016)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 7,502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000020/ScoringFiles/PGS000020.txt.gz
PGS004207
(db_2)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Direct bilirubin bilirubin measurement 7,438
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004207/ScoringFiles/PGS004207.txt.gz
PGS018822
(TPMI_274.1_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Gout gout 7,416
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018822/ScoringFiles/PGS018822.txt.gz
PGS001054
(GBE_BIN1210)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Snoring snoring measurement 7,407
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001054/ScoringFiles/PGS001054.txt.gz
PGS003297
(ExPRSweb_CysC_eGFRcys-overall-EA_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate		 7,372
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003297/ScoringFiles/PGS003297.txt.gz
PGS018816
(TPMI_274_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Gout and other crystal arthropathies chondrocalcinosis 2 7,370
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS018816/ScoringFiles/PGS018816.txt.gz
PGS001100
(GBE_INI5084)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Spherical power (right eye) refractive error measurement 7,350
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001100/ScoringFiles/PGS001100.txt.gz
PGS001850
(portability-PLR_496)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Chronic airway obstruction chronic obstructive pulmonary disease 7,347
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001850/ScoringFiles/PGS001850.txt.gz
PGS001854
(portability-PLR_550.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Inguinal hernia Inguinal hernia 7,326
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001854/ScoringFiles/PGS001854.txt.gz
PGS000321
(snpnet_Testosterone_combined)
 PGP000097 |
Flynn E et al. Eur J Hum Genet (2020)
 Serum testosterone levels testosterone measurement 7,319
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000321/ScoringFiles/PGS000321.txt.gz
PGS001285
(GBE_BIN_FC5006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Allergic disease (hay fever, rhinitis, or eczema) (diagnosed by doctor) allergic disease 7,313
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001285/ScoringFiles/PGS001285.txt.gz
PGS003936
(INI30120)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Lymphocyte count lymphocyte count 7,291
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003936/ScoringFiles/PGS003936.txt.gz
PGS004130
(pt_clump_nested.CV.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 7,279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004130/ScoringFiles/PGS004130.txt.gz
PGS004131
(pt_clump_nested.CV.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 7,279
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004131/ScoringFiles/PGS004131.txt.gz
PGS000444
(PRSWEB_PHECODE172.2_UKBB-SAIGE-HRC-X172.2_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Other non-epithelial skin cancer skin cancer 7,231
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000444/ScoringFiles/PGS000444.txt.gz
PGS000988
(GBE_INI30290)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 High light scatter reticulocyte percentage reticulocyte amount 7,184
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000988/ScoringFiles/PGS000988.txt.gz
PGS000322
(snpnet_Testosterone_female-specific)
 PGP000097 |
Flynn E et al. Eur J Hum Genet (2020)
 Serum testosterone levels in females testosterone measurement,
female		 7,168
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000322/ScoringFiles/PGS000322.txt.gz
PGS003024
(ExPRSweb_Hypertension_finngen-R4-I9_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 7,123
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003024/ScoringFiles/PGS003024.txt.gz
PGS000540
(PRSWEB_PHECODE174.1_iCOGS-Overall-BRCA_LASSOSUM_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 7,118
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000540/ScoringFiles/PGS000540.txt.gz
PGS003611
(R_CA1_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right CA1 body volume hippocampal CA1 volume 7,104
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003611/ScoringFiles/PGS003611.txt.gz
PGS002991
(ExPRSweb_Height_ieu-a-89_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Height body height 7,080
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002991/ScoringFiles/PGS002991.txt.gz
PGS000955
(GBE_INI4120)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Right heel broadband ultrasound attenuation bone quantitative ultrasound measurement 7,069
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000955/ScoringFiles/PGS000955.txt.gz
PGS001836
(portability-PLR_365)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glaucoma glaucoma 7,052
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001836/ScoringFiles/PGS001836.txt.gz
PGS019792
(TPMI_BUN_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Blood urea nitrogen blood urea nitrogen amount 7,043
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019792/ScoringFiles/PGS019792.txt.gz
PGS019537
(TPMI_611.3_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Lump or mass in breast breast neoplasm 7,018
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019537/ScoringFiles/PGS019537.txt.gz
PGS004310
(GenoBoost_type_2_diabetes_0)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 7,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004310/ScoringFiles/PGS004310.txt.gz
PGS004312
(GenoBoost_type_2_diabetes_2)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 7,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004312/ScoringFiles/PGS004312.txt.gz
PGS000516
(PRSWEB_PHECODE174.1_UKBB-SAIGE-HRC-X174.1_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 6,977
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000516/ScoringFiles/PGS000516.txt.gz
PGS001093
(GBE_BIN_FC1001747)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hair color, blonde strand of hair color 6,970
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001093/ScoringFiles/PGS001093.txt.gz
PGS004203
(lpa_3)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Lipoprotein A lipoprotein A measurement 6,935
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004203/ScoringFiles/PGS004203.txt.gz
PGS004204
(lpa_4)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Lipoprotein A lipoprotein A measurement 6,927
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004204/ScoringFiles/PGS004204.txt.gz
PGS003656
(R_hippocampal_tail_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right hippocampal tail volume hippocampal formation volume 6,924
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003656/ScoringFiles/PGS003656.txt.gz
PGS002990
(ExPRSweb_Height_ieu-a-89_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Height body height 6,903
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002990/ScoringFiles/PGS002990.txt.gz
PGS002416
(disease_PSORIASIS.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Psoriasis psoriasis 6,879
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002416/ScoringFiles/PGS002416.txt.gz
PGS003402
(PRS_T2D)
 PGP000419 |
Lamri A et al. Elife (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 6,838
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003402/ScoringFiles/PGS003402.txt.gz
PGS001071
(GBE_BIN_FC30001757)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Facial aging, looking 'about your age' aging rate 6,782
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001071/ScoringFiles/PGS001071.txt.gz
PGS004177
(asthma_2)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Asthma asthma 6,770
-
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004177/ScoringFiles/PGS004177.txt.gz
PGS001284
(GBE_BIN_FC10006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Allergic disease (hay fever, allergic rhinitis, or eczema) allergic disease 6,755
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001284/ScoringFiles/PGS001284.txt.gz
PGS003019
(ExPRSweb_Hypertension_finngen-R4-FG_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertensive disorder 6,731
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003019/ScoringFiles/PGS003019.txt.gz
PGS003631
(R_CA3_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right CA3 body volume hippocampal CA3 volume 6,731
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003631/ScoringFiles/PGS003631.txt.gz
PGS003151
(ExPRSweb_TG_30870-raw_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Triglycerides triglyceride measurement 6,730
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003151/ScoringFiles/PGS003151.txt.gz
PGS002031
(portability-ldpred2_275.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Disorders of iron metabolism iron metabolism disease 6,713
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002031/ScoringFiles/PGS002031.txt.gz
PGS003681
(L_molecular_layer_HP_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left molecular layer hippocampus proper head volume hippocampus molecular layer volume 6,707
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003681/ScoringFiles/PGS003681.txt.gz
PGS002407
(disease_HYPERTENSION_DIAGNOSED.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Hypertension hypertensive disorder 6,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002407/ScoringFiles/PGS002407.txt.gz
PGS002544
(blood_EOSINOPHIL_COUNT.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Eosinophil count eosinophil count 6,683
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002544/ScoringFiles/PGS002544.txt.gz
PGS004020
(lassosum.CV.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 6,682
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004020/ScoringFiles/PGS004020.txt.gz
PGS001060
(GBE_QT_FC1001408)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cheese intake diet measurement 6,678
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001060/ScoringFiles/PGS001060.txt.gz
PGS002552
(blood_HIGH_LIGHT_SCATTER_RETICULOCYTE_COUNT.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 High light scatter reticulocyte count reticulocyte count 6,655
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002552/ScoringFiles/PGS002552.txt.gz
PGS001034
(GBE_QT_FC10001478)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Salt added to food diet measurement 6,651
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001034/ScoringFiles/PGS001034.txt.gz
Showing 4551 to 4600 of 6982 rows