Polygenic Score (PGS) ID: PGS001931

Predicted Trait
Reported Trait Average total household income before tax
Mapped Trait(s) household income (EFO_0009695)
Additional Trait Information lifestyle and environment
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-PLR_income
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 41,836
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010323 PSS009418|
European Ancestry|
17,147 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): 0.1409 [0.1262, 0.1556] sex, age, birth date, deprivation index, 16 PCs
PPM010325 PSS008746|
European Ancestry|
5,619 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): 0.1334 [0.1076, 0.159] sex, age, birth date, deprivation index, 16 PCs
PPM010326 PSS008520|
Greater Middle Eastern Ancestry|
809 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): 0.0857 [0.016, 0.1546] sex, age, birth date, deprivation index, 16 PCs
PPM010327 PSS008298|
South Asian Ancestry|
4,548 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): 0.0826 [0.0536, 0.1114] sex, age, birth date, deprivation index, 16 PCs
PPM010328 PSS008075|
East Asian Ancestry|
1,404 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): 0.0367 [-0.016, 0.0892] sex, age, birth date, deprivation index, 16 PCs
PPM010329 PSS007862|
African Ancestry|
1,874 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): -0.0034 [-0.0489, 0.0422] sex, age, birth date, deprivation index, 16 PCs
PPM010330 PSS008966|
African Ancestry|
2,881 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): 0.0395 [0.0028, 0.076] sex, age, birth date, deprivation index, 16 PCs
PPM010324 PSS009192|
European Ancestry|
3,467 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Average total household income before tax Partial Correlation (partial-r): 0.0935 [0.0603, 0.1265] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008966 2,881 individuals African unspecified Nigeria (West Africa) UKB
PSS008520 809 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009192 3,467 individuals European Poland (NE Europe) UKB
PSS008746 5,619 individuals European Italy (South Europe) UKB
PSS008298 4,548 individuals South Asian India (South Asia) UKB
PSS009418 17,147 individuals European UK (+ Ireland) UKB
PSS008075 1,404 individuals East Asian China (East Asia) UKB
PSS007862 1,874 individuals African American or Afro-Caribbean Carribean UKB