Polygenic Score (PGS) ID: PGS002006

Predicted Trait
Reported Trait Snoring
Mapped Trait(s) snoring measurement (EFO_0008341)
Additional Trait Information physical measures
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-PLR_snoring
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 33,917
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010922 PSS009491|
European Ancestry|
18,616 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.1113 [0.0971, 0.1255] sex, age, birth date, deprivation index, 16 PCs
PPM010923 PSS009265|
European Ancestry|
3,654 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.1078 [0.0755, 0.1398] sex, age, birth date, deprivation index, 16 PCs
PPM010924 PSS008819|
European Ancestry|
6,027 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.0992 [0.0741, 0.1242] sex, age, birth date, deprivation index, 16 PCs
PPM010925 PSS008593|
Greater Middle Eastern Ancestry|
1,011 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.0834 [0.0212, 0.1449] sex, age, birth date, deprivation index, 16 PCs
PPM010927 PSS008147|
East Asian Ancestry|
1,576 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.0748 [0.0252, 0.1241] sex, age, birth date, deprivation index, 16 PCs
PPM010929 PSS009039|
African Ancestry|
3,448 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.0557 [0.0223, 0.089] sex, age, birth date, deprivation index, 16 PCs
PPM010926 PSS008371|
South Asian Ancestry|
5,655 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.0816 [0.0556, 0.1075] sex, age, birth date, deprivation index, 16 PCs
PPM010928 PSS007935|
African Ancestry|
2,178 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Snoring Partial Correlation (partial-r): 0.07 [0.0279, 0.1119] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009039 3,448 individuals African unspecified Nigeria (West Africa) UKB
PSS008593 1,011 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009265 3,654 individuals European Poland (NE Europe) UKB
PSS008819 6,027 individuals European Italy (South Europe) UKB
PSS008147 1,576 individuals East Asian China (East Asia) UKB
PSS009491 18,616 individuals European UK (+ Ireland) UKB
PSS008371 5,655 individuals South Asian India (South Asia) UKB
PSS007935 2,178 individuals African American or Afro-Caribbean Carribean UKB