Trait: menstrual cycle measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0007786
Description quantification of some aspect's of a female's menstrual cycle such as its length
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001913
(portability-PLR_F_length_menstrual_cycle)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Length of menstrual cycle menstrual cycle measurement 339
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001913/ScoringFiles/PGS001913.txt.gz
PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Length of menstrual cycle menstrual cycle measurement 414,081
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002128/ScoringFiles/PGS002128.txt.gz
PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Length of menstrual cycle menstrual cycle measurement 491,888
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002129/ScoringFiles/PGS002129.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010187 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS009373|
European Ancestry|
987 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0877 [0.0248, 0.1499] sex, age, birth date, deprivation index, 16 PCs
PPM010188 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS009147|
European Ancestry|
308 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0665 [-0.0493, 0.1805] sex, age, birth date, deprivation index, 16 PCs
PPM010189 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008701|
European Ancestry|
538 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0619 [-0.0243, 0.1472] sex, age, birth date, deprivation index, 16 PCs
PPM010190 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008475|
Greater Middle Eastern Ancestry|
72 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1511 [-0.1243, 0.4048] sex, age, birth date, deprivation index, 16 PCs
PPM010191 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008253|
South Asian Ancestry|
402 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0823 [-0.0181, 0.181] sex, age, birth date, deprivation index, 16 PCs
PPM010192 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008031|
East Asian Ancestry|
197 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1249 [-0.0226, 0.2671] sex, age, birth date, deprivation index, 16 PCs
PPM010193 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS007817|
African Ancestry|
211 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.1436 [-0.2795, -0.002] sex, age, birth date, deprivation index, 16 PCs
PPM010194 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008921|
African Ancestry|
282 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0278 [-0.0935, 0.1482] sex, age, birth date, deprivation index, 16 PCs
PPM011884 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008030|
East Asian Ancestry|
233 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0906 [-0.0441, 0.222] sex, age, birth date, deprivation index, 16 PCs
PPM011879 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS009372|
European Ancestry|
1,185 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0848 [0.0275, 0.1415] sex, age, birth date, deprivation index, 16 PCs
PPM011880 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS009146|
European Ancestry|
383 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0318 [-0.1342, 0.0712] sex, age, birth date, deprivation index, 16 PCs
PPM011881 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008700|
European Ancestry|
618 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0388 [-0.0415, 0.1187] sex, age, birth date, deprivation index, 16 PCs
PPM011882 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008474|
Greater Middle Eastern Ancestry|
80 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1866 [-0.0685, 0.4187] sex, age, birth date, deprivation index, 16 PCs
PPM011883 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008252|
South Asian Ancestry|
444 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0248 [-0.1197, 0.0705] sex, age, birth date, deprivation index, 16 PCs
PPM011885 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS007816|
African Ancestry|
269 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0692 [-0.1917, 0.0553] sex, age, birth date, deprivation index, 16 PCs
PPM011886 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008920|
African Ancestry|
356 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0391 [-0.1454, 0.068] sex, age, birth date, deprivation index, 16 PCs
PPM011887 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS009373|
European Ancestry|
987 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1022 [0.0394, 0.1641] sex, age, birth date, deprivation index, 16 PCs
PPM011888 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS009147|
European Ancestry|
308 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.157 [0.0424, 0.2676] sex, age, birth date, deprivation index, 16 PCs
PPM011889 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008701|
European Ancestry|
538 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0269 [-0.0593, 0.1127] sex, age, birth date, deprivation index, 16 PCs
PPM011890 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008475|
Greater Middle Eastern Ancestry|
72 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0688 [-0.2053, 0.3329] sex, age, birth date, deprivation index, 16 PCs
PPM011891 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008253|
South Asian Ancestry|
402 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1682 [0.0691, 0.2639] sex, age, birth date, deprivation index, 16 PCs
PPM011892 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008031|
East Asian Ancestry|
197 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1261 [-0.0213, 0.2682] sex, age, birth date, deprivation index, 16 PCs
PPM011893 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS007817|
African Ancestry|
211 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0358 [-0.1765, 0.1064] sex, age, birth date, deprivation index, 16 PCs
PPM011894 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008921|
African Ancestry|
282 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0043 [-0.1252, 0.1167] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008253 402 individuals South Asian India (South Asia) UKB
PSS008252 444 individuals South Asian India (South Asia) UKB
PSS007816 269 individuals African American or Afro-Caribbean Carribean UKB
PSS007817 211 individuals African American or Afro-Caribbean Carribean UKB
PSS008700 618 individuals European Italy (South Europe) UKB
PSS008701 538 individuals European Italy (South Europe) UKB
PSS009147 308 individuals European Poland (NE Europe) UKB
PSS008920 356 individuals African unspecified Nigeria (West Africa) UKB
PSS008921 282 individuals African unspecified Nigeria (West Africa) UKB
PSS009146 383 individuals European Poland (NE Europe) UKB
PSS008475 72 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009372 1,185 individuals European UK (+ Ireland) UKB
PSS009373 987 individuals European UK (+ Ireland) UKB
PSS008030 233 individuals East Asian China (East Asia) UKB
PSS008031 197 individuals East Asian China (East Asia) UKB
PSS008474 80 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB