Trait: menstrual cycle measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0007786
Description quantification of some aspect's of a female's menstrual cycle such as its length
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS001913
(portability-PLR_F_length_menstrual_cycle)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Length of menstrual cycle menstrual cycle measurement 339
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001913/ScoringFiles/PGS001913.txt.gz
PGS002079
(portability-ldpred2_626.1)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Irregular menstrual cycle/bleeding menstrual cycle measurement 719,789
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002079/ScoringFiles/PGS002079.txt.gz
PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Length of menstrual cycle menstrual cycle measurement 414,081
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002128/ScoringFiles/PGS002128.txt.gz
PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Length of menstrual cycle menstrual cycle measurement 491,888
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002129/ScoringFiles/PGS002129.txt.gz
PGS003506
(cont-decay-F_length_menstrual_cycle)
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Length of menstrual cycle menstrual cycle measurement 979,739
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003506/ScoringFiles/PGS003506.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010187 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS009373|
European Ancestry|
987 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0877 [0.0248, 0.1499] sex, age, birth date, deprivation index, 16 PCs
PPM010188 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS009147|
European Ancestry|
308 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0665 [-0.0493, 0.1805] sex, age, birth date, deprivation index, 16 PCs
PPM010189 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008701|
European Ancestry|
538 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0619 [-0.0243, 0.1472] sex, age, birth date, deprivation index, 16 PCs
PPM010190 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008475|
Greater Middle Eastern Ancestry|
72 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1511 [-0.1243, 0.4048] sex, age, birth date, deprivation index, 16 PCs
PPM010191 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008253|
South Asian Ancestry|
402 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0823 [-0.0181, 0.181] sex, age, birth date, deprivation index, 16 PCs
PPM010192 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008031|
East Asian Ancestry|
197 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1249 [-0.0226, 0.2671] sex, age, birth date, deprivation index, 16 PCs
PPM010193 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS007817|
African Ancestry|
211 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.1436 [-0.2795, -0.002] sex, age, birth date, deprivation index, 16 PCs
PPM010194 PGS001913
(portability-PLR_F_length_menstrual_cycle)
PSS008921|
African Ancestry|
282 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0278 [-0.0935, 0.1482] sex, age, birth date, deprivation index, 16 PCs
PPM011493 PGS002079
(portability-ldpred2_626.1)
PSS009343|
European Ancestry|
10,063 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): 0.0369 [0.0173, 0.0564] sex, age, birth date, deprivation index, 16 PCs
PPM011495 PGS002079
(portability-ldpred2_626.1)
PSS008671|
European Ancestry|
3,394 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): 0.0311 [-0.0027, 0.0647] sex, age, birth date, deprivation index, 16 PCs
PPM011496 PGS002079
(portability-ldpred2_626.1)
PSS008445|
Greater Middle Eastern Ancestry|
441 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): 0.0755 [-0.0201, 0.1697] sex, age, birth date, deprivation index, 16 PCs
PPM011497 PGS002079
(portability-ldpred2_626.1)
PSS008225|
South Asian Ancestry|
2,690 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): 0.0716 [0.0337, 0.1092] sex, age, birth date, deprivation index, 16 PCs
PPM011498 PGS002079
(portability-ldpred2_626.1)
PSS008006|
East Asian Ancestry|
1,113 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): -0.0068 [-0.066, 0.0525] sex, age, birth date, deprivation index, 16 PCs
PPM011499 PGS002079
(portability-ldpred2_626.1)
PSS007790|
African Ancestry|
1,471 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): -0.0312 [-0.0825, 0.0202] sex, age, birth date, deprivation index, 16 PCs
PPM011500 PGS002079
(portability-ldpred2_626.1)
PSS008894|
African Ancestry|
1,972 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): 0.0036 [-0.0408, 0.0479] sex, age, birth date, deprivation index, 16 PCs
PPM011494 PGS002079
(portability-ldpred2_626.1)
PSS009117|
European Ancestry|
2,376 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Irregular menstrual cycle/bleeding Partial Correlation (partial-r): 0.0467 [0.0064, 0.0869] sex, age, birth date, deprivation index, 16 PCs
PPM011884 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008030|
East Asian Ancestry|
233 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0906 [-0.0441, 0.222] sex, age, birth date, deprivation index, 16 PCs
PPM011879 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS009372|
European Ancestry|
1,185 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0848 [0.0275, 0.1415] sex, age, birth date, deprivation index, 16 PCs
PPM011880 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS009146|
European Ancestry|
383 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0318 [-0.1342, 0.0712] sex, age, birth date, deprivation index, 16 PCs
PPM011881 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008700|
European Ancestry|
618 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0388 [-0.0415, 0.1187] sex, age, birth date, deprivation index, 16 PCs
PPM011882 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008474|
Greater Middle Eastern Ancestry|
80 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1866 [-0.0685, 0.4187] sex, age, birth date, deprivation index, 16 PCs
PPM011883 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008252|
South Asian Ancestry|
444 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0248 [-0.1197, 0.0705] sex, age, birth date, deprivation index, 16 PCs
PPM011885 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS007816|
African Ancestry|
269 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0692 [-0.1917, 0.0553] sex, age, birth date, deprivation index, 16 PCs
PPM011886 PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
PSS008920|
African Ancestry|
356 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0391 [-0.1454, 0.068] sex, age, birth date, deprivation index, 16 PCs
PPM011887 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS009373|
European Ancestry|
987 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1022 [0.0394, 0.1641] sex, age, birth date, deprivation index, 16 PCs
PPM011888 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS009147|
European Ancestry|
308 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.157 [0.0424, 0.2676] sex, age, birth date, deprivation index, 16 PCs
PPM011889 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008701|
European Ancestry|
538 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0269 [-0.0593, 0.1127] sex, age, birth date, deprivation index, 16 PCs
PPM011890 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008475|
Greater Middle Eastern Ancestry|
72 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.0688 [-0.2053, 0.3329] sex, age, birth date, deprivation index, 16 PCs
PPM011891 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008253|
South Asian Ancestry|
402 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1682 [0.0691, 0.2639] sex, age, birth date, deprivation index, 16 PCs
PPM011892 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008031|
East Asian Ancestry|
197 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): 0.1261 [-0.0213, 0.2682] sex, age, birth date, deprivation index, 16 PCs
PPM011893 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS007817|
African Ancestry|
211 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0358 [-0.1765, 0.1064] sex, age, birth date, deprivation index, 16 PCs
PPM011894 PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
PSS008921|
African Ancestry|
282 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Length of menstrual cycle Partial Correlation (partial-r): -0.0043 [-0.1252, 0.1167] sex, age, birth date, deprivation index, 16 PCs
PPM017434 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010867|
European Ancestry|
1,768 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.01 sex, age, deprivation index, PC1-16
PPM017518 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010783|
European Ancestry|
589 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.02 sex, age, deprivation index, PC1-16
PPM017686 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010531|
Greater Middle Eastern Ancestry|
145 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.02 sex, age, deprivation index, PC1-16
PPM017770 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010195|
European Ancestry|
157 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.01 sex, age, deprivation index, PC1-16
PPM017854 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010447|
South Asian Ancestry|
724 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.02 sex, age, deprivation index, PC1-16
PPM017938 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010363|
East Asian Ancestry|
388 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.03 sex, age, deprivation index, PC1-16
PPM018022 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010279|
African Ancestry|
431 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.0 sex, age, deprivation index, PC1-16
PPM018106 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010699|
African Ancestry|
527 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.0 sex, age, deprivation index, PC1-16
PPM017602 PGS003506
(cont-decay-F_length_menstrual_cycle)
PSS010615|
European Ancestry|
920 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Length of menstrual cycle partial-R2: 0.01 sex, age, deprivation index, PC1-16

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010783 589 individuals,
0.0 % Male samples
Mean = 45.7 years
Sd = 3.9 years
European Polish UKB
PSS008006 1,113 individuals East Asian China (East Asia) UKB
PSS010531 145 individuals,
0.0 % Male samples
Mean = 45.9 years
Sd = 4.5 years
Greater Middle Eastern (Middle Eastern, North African or Persian) Iranian UKB
PSS010279 431 individuals,
0.0 % Male samples
Mean = 45.8 years
Sd = 3.8 years
African American or Afro-Caribbean Caribbean UKB
PSS008920 356 individuals African unspecified Nigeria (West Africa) UKB
PSS008921 282 individuals African unspecified Nigeria (West Africa) UKB
PSS008030 233 individuals East Asian China (East Asia) UKB
PSS008671 3,394 individuals European Italy (South Europe) UKB
PSS008031 197 individuals East Asian China (East Asia) UKB
PSS007790 1,471 individuals African American or Afro-Caribbean Carribean UKB
PSS010699 527 individuals,
0.0 % Male samples
Mean = 45.0 years
Sd = 3.6 years
African unspecified Nigerian UKB
PSS010447 724 individuals,
0.0 % Male samples
Mean = 45.2 years
Sd = 4.4 years
South Asian Indian UKB
PSS010195 157 individuals,
0.0 % Male samples
Mean = 47.0 years
Sd = 3.9 years
European Ashkenazi UKB
PSS008700 618 individuals European Italy (South Europe) UKB
PSS008445 441 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS008701 538 individuals European Italy (South Europe) UKB
PSS009343 10,063 individuals European UK (+ Ireland) UKB
PSS007816 269 individuals African American or Afro-Caribbean Carribean UKB
PSS007817 211 individuals African American or Afro-Caribbean Carribean UKB
PSS010867 1,768 individuals,
0.0 % Male samples
Mean = 45.9 years
Sd = 3.9 years
European white British UKB
PSS008474 80 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS008475 72 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009372 1,185 individuals European UK (+ Ireland) UKB
PSS009373 987 individuals European UK (+ Ireland) UKB
PSS009117 2,376 individuals European Poland (NE Europe) UKB
PSS010615 920 individuals,
0.0 % Male samples
Mean = 45.2 years
Sd = 3.8 years
European Italian UKB
PSS008225 2,690 individuals South Asian India (South Asia) UKB
PSS010363 388 individuals,
0.0 % Male samples
Mean = 45.6 years
Sd = 3.8 years
East Asian Chinese UKB
PSS009146 383 individuals European Poland (NE Europe) UKB
PSS009147 308 individuals European Poland (NE Europe) UKB
PSS008252 444 individuals South Asian India (South Asia) UKB
PSS008253 402 individuals South Asian India (South Asia) UKB
PSS008894 1,972 individuals African unspecified Nigeria (West Africa) UKB