Trait Information | |
Identifier | MONDO_0015860 | Trait category |
Other disease
|
Mapped term | Orphanet:180208 |
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | Ancestry distribution | Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS002079 (portability-ldpred2_626.1) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Irregular menstrual cycle/bleeding | anomaly of puberty or/and menstrual cycle | 719,789 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002079/ScoringFiles/PGS002079.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM011493 | PGS002079 (portability-ldpred2_626.1) |
PSS009343| European Ancestry| 10,063 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): 0.0369 [0.0173, 0.0564] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011495 | PGS002079 (portability-ldpred2_626.1) |
PSS008671| European Ancestry| 3,394 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): 0.0311 [-0.0027, 0.0647] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011496 | PGS002079 (portability-ldpred2_626.1) |
PSS008445| Greater Middle Eastern Ancestry| 441 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): 0.0755 [-0.0201, 0.1697] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011497 | PGS002079 (portability-ldpred2_626.1) |
PSS008225| South Asian Ancestry| 2,690 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): 0.0716 [0.0337, 0.1092] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011498 | PGS002079 (portability-ldpred2_626.1) |
PSS008006| East Asian Ancestry| 1,113 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): -0.0068 [-0.066, 0.0525] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011499 | PGS002079 (portability-ldpred2_626.1) |
PSS007790| African Ancestry| 1,471 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): -0.0312 [-0.0825, 0.0202] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011500 | PGS002079 (portability-ldpred2_626.1) |
PSS008894| African Ancestry| 1,972 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): 0.0036 [-0.0408, 0.0479] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011494 | PGS002079 (portability-ldpred2_626.1) |
PSS009117| European Ancestry| 2,376 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Irregular menstrual cycle/bleeding | — | — | Partial Correlation (partial-r): 0.0467 [0.0064, 0.0869] | sex, age, birth date, deprivation index, 16 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS008006 | — | — | 1,113 individuals | — | East Asian | China (East Asia) | UKB | — |
PSS007790 | — | — | 1,471 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |
PSS009343 | — | — | 10,063 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS008445 | — | — | 441 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS008894 | — | — | 1,972 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
PSS008671 | — | — | 3,394 individuals | — | European | Italy (South Europe) | UKB | — |
PSS009117 | — | — | 2,376 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS008225 | — | — | 2,690 individuals | — | South Asian | India (South Asia) | UKB | — |