Publication: Genetic assessment of age-associated Alzheimer disease risk: Development and validation of a polygenic hazard score.
Publication Date: March 21, 2017
Journal: PLoS Med
Authors: Desikan RS, Fan CC, Wang Y, Schork AJ, Cabral HJ, Cupples LA, Thompson WK, Besser L, Kukull WA, Holland D, Chen CH, Brewer JB, Karow DS, Kauppi K, Witoelar A, Karch CM, Bonham LW, Yokoyama JS, Rosen HJ, Miller BL, Dillon WP, Wilson DM, Hess CP, Pericak-Vance M, Haines JL, Farrer LA, Mayeux R, Hardy J, Goate AM, Hyman BT, Schellenberg GD, McEvoy LK, Andreassen OA, Dale AM.
PGS Associated with PGP000016
PGS Developed By This Study
PGS Performance MetricsDisclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.
|PGS Performance Metric (PPM) ID||Evaluated Score||PGS Catalog Sample Set (PSS) ID||Performance Source||Trait||
PGS Effect Sizes
(per SD change)
|PGS Classification Metrics||Other Metrics||Covariates Included in PGS Model||PGS Performance: Other Relevant Information|
|PPM000053||PGS000026 (PHS)||PSS000036||Desikan RS et al. (2017)||Reported Trait: Alzheimer disease||—||—||r (correlation between between binned quantiles of PHS-predicted and empirical age of AD onset): 0.9||APOE risk alleles (e2 and e4), age, sex, genetic PCs 1-5||—|
|PGS Catalog Sample Set (PSS) ID||Detailed Phenotype Description (e.g. ICD/SNOMED codes used to identify cases)||Sample Numbers||Sample Ancestry||Additional Ancestry Description||Cohort(s)||Additional Sample/Cohort Information|
|PSS000036||Cases are patients with clinically diagnosed AD and compared to cognitively normal older individuals||17,956 individuals
[ 6,984 cases, 10,972 controls]
40.51 %% Male samples
|European||—||ADGC||ADGC Phase 2|