Polygenic Score (PGS) ID: PGS000163

Predicted Trait
Reported Trait Basophil count
Mapped Trait(s) basophil count (EFO_0005090)
Additional Trait Information BASO#
Released in PGS: April 29, 2020

Score Details

Score Construction
PGS Name baso
Variants
Original Genome Build GRCh37
Number of Variants 185
Development Method
Name Genomewide-significant SNPs
Parameters Conditionally independent GWAS associations
PGS Source
PGS Catalog Publication (PGP) ID PGP000078
Citation (link to publication) Vuckovic D et al. medRxiv (2020) Preprint

Contributing Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry
EuropePMC: 10.1101/2020.02.02.20020065 408,112 individuals European

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance Metric ID
(PPM ID)
PGS Sample Set ID
(PSS ID)
Performance Source Trait PGS Effect Sizes
(per SD change)
PGS Classification Metrics Other Metrics Covariates Included in the Model PGS Performance: Other Relevant Information
PPM000519 PSS000291 PGP000078
Vuckovic D et al. (2020)
Pre
Reported Trait: Basophil count : 0.0269108302450236 sex, age, 10 genetic PCs
PPM000546 PSS000290 PGP000078
Vuckovic D et al. (2020)
Pre
Reported Trait: Basophil count : 0.0088977112141824 sex, age, 10 genetic PCs

Evaluated Samples

PGS Sample Set ID
(PSS ID)
Detailed Phenotype Description Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000290 2,314 individuals European
(French Canadian)
CARTaGENE
PSS000291 39,260 individuals European INTERVAL