| Predicted Trait | |
| Reported Trait | Reticulocyte fraction of red cells |
| Mapped Trait(s) | reticulocyte count (EFO_0007986) |
| Additional Trait Information | RET% |
| Score Construction | |
| PGS Name | ret_p |
| Variants | |
| Original Genome Build | GRCh37 |
| Number of Variants | 537 |
| Development Method | |
| Name | Genomewide-significant SNPs |
| Parameters | Conditionally independent GWAS associations |
| PGS Source | |
| PGS Catalog Publication (PGP) ID | PGP000078 |
| Citation (link to publication) | Vuckovic D et al. medRxiv (2020) Preprint |
| Study Identifiers | Sample Numbers | Sample Ancestry |
|---|---|---|
| EuropePMC: 10.1101/2020.02.02.20020065 | 408,112 individuals | European |
Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.
|
PGS Performance Metric ID (PPM ID) |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|
| PPM000544 | PSS000291 | PGP000078 Vuckovic D et al. (2020) Pre |
Reported Trait: Reticulocyte fraction of red cells | — | — | R²: 0.15022055905487 | sex, age, 10 genetic PCs | — |
|
PGS Sample Set ID (PSS ID) |
Detailed Phenotype Description | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS000291 | — | — | 39,260 individuals | — | European | — | INTERVAL | — |