Predicted Trait | |
Reported Trait | Reticulocyte fraction of red cells |
Mapped Trait(s) | reticulocyte count (EFO_0007986) |
Additional Trait Information | RET% |
Score Construction | |
PGS Name | ret_p |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 537 |
Development Method | |
Name | Genomewide-significant SNPs |
Parameters | Conditionally independent GWAS associations |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000078 |
Citation (link to publication) | Vuckovic D et al. Cell (2020) |
Study Identifiers | Sample Numbers | Sample Ancestry |
---|---|---|
EuropePMC: 10.1101/2020.02.02.20020065 | 408,112 individuals | European |
PGS Performance Metric ID (PPM ID) |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM000544 | PSS000291 | PGP000078 Vuckovic D et al. (2020) | Reported Trait: Reticulocyte fraction of red cells | — | — | R²: 0.15022 | sex, age, 10 genetic PCs | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000291 | — | — | 39,260 individuals | — | European | — | INTERVAL | — |