Predicted Trait | |
Reported Trait | Aspartate aminotransferase [U/L] |
Mapped Trait(s) | aspartate aminotransferase measurement (EFO_0004736) |
Score Construction | |
PGS Name | snpnet.Aspartate_aminotransferase |
Variants | |
Original Genome Build | hg19 |
Number of Variants | 12,829 |
Development Method | |
Name | snpnet |
Parameters | 1,080,968 variants as input (directly genotyped variants, imputed HLA allelotypes, and CNVs) |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000128 |
Citation (link to publication) | Sinnott-Armstrong N et al. Nat Genet (2021) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|
— | — | 223,327 individuals | — | European (British) |
— | UKB | Training |
— | — | 31,929 individuals | — | European (British) |
— | UKB | Validation |
PGS Performance Metric ID (PPM ID) |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM001471 | PSS000649 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Aspartate aminotransferase [U/L] | — | — | R²: 0.1564 Spearman's ρ: 0.278 |
Age, sex, PCs(1-40) | — |
PPM001541 | PSS000651 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Aspartate aminotransferase [U/L] | — | — | R²: 0.1493 Spearman's ρ: 0.285 |
Age, sex, PCs(1-40) | — |
PPM001506 | PSS000650 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Aspartate aminotransferase [U/L] | — | — | R²: 0.11262 Spearman's ρ: 0.243 |
Age, sex, PCs(1-40) | — |
PPM001436 | PSS000648 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Aspartate aminotransferase [U/L] | — | — | R²: 0.08343 Spearman's ρ: 0.191 |
Age, sex, PCs(1-40) | — |
PPM001401 | PSS000647 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Aspartate aminotransferase [U/L] | — | — | R²: 0.10334 Spearman's ρ: 0.103 |
Age, sex, PCs(1-40) | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000647 | — | — | 5,982 individuals | — | African unspecified | — | UKB | — |
PSS000648 | — | — | 1,070 individuals | — | East Asian | — | UKB | — |
PSS000649 | — | — | 23,483 individuals | — | European | Non-British White | UKB | — |
PSS000650 | — | — | 7,313 individuals | — | South Asian | — | UKB | — |
PSS000651 | — | — | 63,562 individuals | — | European (British) |
— | UKB | — |