Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0004532 |
Description |
|
Trait category |
Liver enzyme measurement
|
Synonyms |
4 synonyms
|
Mapped term(s) | SNOMEDCT:313849004 |
Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000683 | snpnet.Gamma_glutamyltransferase | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) | Gamma glutamyltransferase [U/L] | serum gamma-glutamyl transferase measurement | 17,323 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000683/ScoringFiles/PGS000683.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM001551 | PGS000683 (snpnet.Gamma_glutamyltransferase) |
PSS000693 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Gamma glutamyltransferase [U/L] | — | — | R²: 0.24765 Spearman's ρ: 0.375 |
Age, sex, PCs(1-40) | — |
PPM001516 | PGS000683 (snpnet.Gamma_glutamyltransferase) |
PSS000692 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Gamma glutamyltransferase [U/L] | — | — | R²: 0.20072 Spearman's ρ: 0.338 |
Age, sex, PCs(1-40) | — |
PPM001481 | PGS000683 (snpnet.Gamma_glutamyltransferase) |
PSS000691 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Gamma glutamyltransferase [U/L] | — | — | R²: 0.26555 Spearman's ρ: 0.36 |
Age, sex, PCs(1-40) | — |
PPM001446 | PGS000683 (snpnet.Gamma_glutamyltransferase) |
PSS000690 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Gamma glutamyltransferase [U/L] | — | — | R²: 0.16131 Spearman's ρ: 0.33 |
Age, sex, PCs(1-40) | — |
PPM001411 | PGS000683 (snpnet.Gamma_glutamyltransferase) |
PSS000689 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Gamma glutamyltransferase [U/L] | — | — | R²: 0.12099 Spearman's ρ: 0.187 |
Age, sex, PCs(1-40) | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000689 | — | — | 6,015 individuals | — | African unspecified | — | UKB | — |
PSS000690 | — | — | 1,081 individuals | — | East Asian | — | UKB | — |
PSS000691 | — | — | 23,560 individuals | — | European | Non-British White | UKB | — |
PSS000692 | — | — | 7,336 individuals | — | South Asian | — | UKB | — |
PSS000693 | — | — | 63,756 individuals | — | European (British) |
— | UKB | — |