Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0004533 |
Description |
|
Trait category |
Liver enzyme measurement
|
Synonyms | AP |
Mapped term(s) |
2 mapped terms
|
Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000670 | snpnet.Alkaline_phosphatase | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) | Alkaline phosphatase [U/L] | alkaline phosphatase measurement | 18,328 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000670/ScoringFiles/PGS000670.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM001538 | PGS000670 (snpnet.Alkaline_phosphatase) |
PSS000636 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Alkaline phosphatase [U/L] | — | — | R²: 0.27296 Spearman's ρ: 0.47 |
Age, sex, PCs(1-40) | — |
PPM001503 | PGS000670 (snpnet.Alkaline_phosphatase) |
PSS000635 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Alkaline phosphatase [U/L] | — | — | R²: 0.23672 Spearman's ρ: 0.426 |
Age, sex, PCs(1-40) | — |
PPM001468 | PGS000670 (snpnet.Alkaline_phosphatase) |
PSS000634 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Alkaline phosphatase [U/L] | — | — | R²: 0.29073 Spearman's ρ: 0.449 |
Age, sex, PCs(1-40) | — |
PPM001433 | PGS000670 (snpnet.Alkaline_phosphatase) |
PSS000633 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Alkaline phosphatase [U/L] | — | — | R²: 0.25549 Spearman's ρ: 0.335 |
Age, sex, PCs(1-40) | — |
PPM001398 | PGS000670 (snpnet.Alkaline_phosphatase) |
PSS000632 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Alkaline phosphatase [U/L] | — | — | R²: 0.11131 Spearman's ρ: 0.229 |
Age, sex, PCs(1-40) | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000632 | — | — | 6,019 individuals | — | African unspecified | — | UKB | — |
PSS000633 | — | — | 1,082 individuals | — | East Asian | — | UKB | — |
PSS000634 | — | — | 23,582 individuals | — | European | Non-British White | UKB | — |
PSS000635 | — | — | 7,337 individuals | — | South Asian | — | UKB | — |
PSS000636 | — | — | 63,795 individuals | — | European (British) |
— | UKB | — |