Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0004615 |
Description |
|
Trait category |
Lipid or lipoprotein measurement
|
Mapped term(s) | NCIt:C74734 |
Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000672 | snpnet.Apolipoprotein_B_adjstatins | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) | Apolipoprotein B [g/L] (statin adjusted) | apolipoprotein B measurement | 18,666 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000672/ScoringFiles/PGS000672.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM001505 | PGS000672 (snpnet.Apolipoprotein_B_adjstatins) |
PSS000645 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Apolipoprotein B [g/L] (statin adjusted) | — | — | R²: 0.15714 Spearman's ρ: 0.335 |
Age, sex, PCs(1-40) | — |
PPM001435 | PGS000672 (snpnet.Apolipoprotein_B_adjstatins) |
PSS000643 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Apolipoprotein B [g/L] (statin adjusted) | — | — | R²: 0.17749 Spearman's ρ: 0.346 |
Age, sex, PCs(1-40) | — |
PPM001540 | PGS000672 (snpnet.Apolipoprotein_B_adjstatins) |
PSS000646 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Apolipoprotein B [g/L] (statin adjusted) | — | — | R²: 0.30182 Spearman's ρ: 0.483 |
Age, sex, PCs(1-40) | — |
PPM001470 | PGS000672 (snpnet.Apolipoprotein_B_adjstatins) |
PSS000644 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Apolipoprotein B [g/L] (statin adjusted) | — | — | R²: 0.29807 Spearman's ρ: 0.467 |
Age, sex, PCs(1-40) | — |
PPM001400 | PGS000672 (snpnet.Apolipoprotein_B_adjstatins) |
PSS000642 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Apolipoprotein B [g/L] (statin adjusted) | — | — | R²: 0.15686 Spearman's ρ: 0.318 |
Age, sex, PCs(1-40) | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000642 | — | — | 5,962 individuals | — | African unspecified | — | UKB | — |
PSS000643 | — | — | 1,074 individuals | — | East Asian | — | UKB | — |
PSS000644 | — | — | 23,448 individuals | — | European | Non-British White | UKB | — |
PSS000645 | — | — | 7,275 individuals | — | South Asian | — | UKB | — |
PSS000646 | — | — | 63,491 individuals | — | European (British) |
— | UKB | — |