Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0004617 |
Description |
|
Trait category |
Other measurement
|
Mapped term(s) | NCIt:C92290 |
Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000680 | snpnet.Cystatin_C | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) | Cystatin C [mg/L] | cystatin C measurement | 24,487 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000680/ScoringFiles/PGS000680.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM001408 | PGS000680 (snpnet.Cystatin_C) |
PSS000677 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Cystatin C [mg/L] | — | — | R²: 0.17697 Spearman's ρ: 0.196 |
Age, sex, PCs(1-40) | — |
PPM001443 | PGS000680 (snpnet.Cystatin_C) |
PSS000678 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Cystatin C [mg/L] | — | — | R²: 0.28853 Spearman's ρ: 0.274 |
Age, sex, PCs(1-40) | — |
PPM001478 | PGS000680 (snpnet.Cystatin_C) |
PSS000679 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Cystatin C [mg/L] | — | — | R²: 0.30498 Spearman's ρ: 0.391 |
Age, sex, PCs(1-40) | — |
PPM001513 | PGS000680 (snpnet.Cystatin_C) |
PSS000680 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Cystatin C [mg/L] | — | — | R²: 0.26742 Spearman's ρ: 0.323 |
Age, sex, PCs(1-40) | — |
PPM001548 | PGS000680 (snpnet.Cystatin_C) |
PSS000681 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Cystatin C [mg/L] | — | — | R²: 0.29509 Spearman's ρ: 0.405 |
Age, sex, PCs(1-40) | — |
PPM001591 | PGS000680 (snpnet.Cystatin_C) |
PSS000802 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Cystatin C [mg/L] | — | — | Spearman's ρ: 0.255 | Age, sex | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000679 | — | — | 23,580 individuals | — | European | Non-British White | UKB | — |
PSS000680 | — | — | 7,338 individuals | — | South Asian | — | UKB | — |
PSS000681 | — | — | 63,762 individuals | — | European (British) |
— | UKB | — |
PSS000802 | — | — | 2,116 individuals | — | European | Participants self-identifying as white | MESA | — |
PSS000677 | — | — | 6,015 individuals | — | African unspecified | — | UKB | — |
PSS000678 | — | — | 1,082 individuals | — | East Asian | — | UKB | — |