Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0004696 |
Description |
|
Trait category |
Other measurement
|
Synonyms |
2 synonyms
|
Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000694 | snpnet.SHBG | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) | SHBG [nmol/L] | sex hormone-binding globulin measurement | 19,328 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000694/ScoringFiles/PGS000694.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM001422 | PGS000694 (snpnet.SHBG) |
PSS000744 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: SHBG [nmol/L] | — | — | R²: 0.22708 Spearman's ρ: 0.235 |
Age, sex, PCs(1-40) | — |
PPM001457 | PGS000694 (snpnet.SHBG) |
PSS000745 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: SHBG [nmol/L] | — | — | R²: 0.31846 Spearman's ρ: 0.311 |
Age, sex, PCs(1-40) | — |
PPM001492 | PGS000694 (snpnet.SHBG) |
PSS000746 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: SHBG [nmol/L] | — | — | R²: 0.35511 Spearman's ρ: 0.384 |
Age, sex, PCs(1-40) | — |
PPM001527 | PGS000694 (snpnet.SHBG) |
PSS000747 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: SHBG [nmol/L] | — | — | R²: 0.28079 Spearman's ρ: 0.326 |
Age, sex, PCs(1-40) | — |
PPM001562 | PGS000694 (snpnet.SHBG) |
PSS000748 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: SHBG [nmol/L] | — | — | R²: 0.34576 Spearman's ρ: 0.414 |
Age, sex, PCs(1-40) | — |
PPM001571 | PGS000694 (snpnet.SHBG) |
PSS000830 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: SHBG [nmol/L] | — | — | Spearman's ρ: 0.19 | Age, sex | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000744 | — | — | 5,523 individuals | — | African unspecified | — | UKB | — |
PSS000745 | — | — | 979 individuals | — | East Asian | — | UKB | — |
PSS000746 | — | — | 21,313 individuals | — | European | Non-British White | UKB | — |
PSS000747 | — | — | 6,638 individuals | — | South Asian | — | UKB | — |
PSS000748 | — | — | 57,677 individuals | — | European (British) |
— | UKB | — |
PSS000830 | — | — | 2,129 individuals | — | European | Participants self-identifying as white | MESA | — |