Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0009282 |
Description | A quantitative measurement of the amount of sodium present in a sample. | Trait category |
Other measurement
|
Synonyms |
2 synonyms
|
Mapped term(s) | PMID:29403010 |
Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000695 | snpnet.Sodium_in_urine | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) | Sodium in urine [mmol/L] | sodium measurement urinary metabolite measurement |
5,833 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000695/ScoringFiles/PGS000695.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM001423 | PGS000695 (snpnet.Sodium_in_urine) |
PSS000749 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Sodium in urine [mmol/L] | — | — | R²: 0.0456 Spearman's ρ: 0.029 |
Age, sex, PCs(1-40) | — |
PPM001458 | PGS000695 (snpnet.Sodium_in_urine) |
PSS000750 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Sodium in urine [mmol/L] | — | — | R²: 0.09743 Spearman's ρ: 0.068 |
Age, sex, PCs(1-40) | — |
PPM001493 | PGS000695 (snpnet.Sodium_in_urine) |
PSS000751 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Sodium in urine [mmol/L] | — | — | R²: 0.11027 Spearman's ρ: 0.077 |
Age, sex, PCs(1-40) | — |
PPM001528 | PGS000695 (snpnet.Sodium_in_urine) |
PSS000752 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Sodium in urine [mmol/L] | — | — | R²: 0.06605 Spearman's ρ: 0.059 |
Age, sex, PCs(1-40) | — |
PPM001563 | PGS000695 (snpnet.Sodium_in_urine) |
PSS000753 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Sodium in urine [mmol/L] | — | — | R²: 0.09883 Spearman's ρ: 0.09 |
Age, sex, PCs(1-40) | — |
PPM001588 | PGS000695 (snpnet.Sodium_in_urine) |
PSS000836 | PGP000128 Sinnott-Armstrong N et al. (2021) | Reported Trait: Sodium in urine [mmol/L] | — | — | Spearman's ρ: 0.059 | Age, sex | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000749 | — | — | 5,781 individuals | — | African unspecified | — | UKB | — |
PSS000750 | — | — | 1,044 individuals | — | East Asian | — | UKB | — |
PSS000751 | — | — | 22,812 individuals | — | European | Non-British White | UKB | — |
PSS000752 | — | — | 6,993 individuals | — | South Asian | — | UKB | — |
PSS000753 | — | — | 62,011 individuals | — | European (British) |
— | UKB | — |
PSS000836 | — | — | 2,117 individuals | — | European | Participants self-identifying as white | MESA | — |