Trait: sodium measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009282
Description A quantitative measurement of the amount of sodium present in a sample.
Trait category
Other measurement
Synonyms 2 synonyms
  • Na measurement
  • sodium levels
Mapped term(s) PMID:29403010

Associated Polygenic Score(s)

Polygenic Score (PGS) ID PGS Name PGS Publication (PGP) ID Reported Trait Mapped Trait(s) (Ontology) Number of Variants PGS Scoring File (FTP Link)
PGS000695 snpnet.Sodium_in_urine PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) Sodium in urine [mmol/L] sodium measurement
urinary metabolite measurement		 5,833 http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000695/ScoringFiles/PGS000695.txt.gz - Check Terms/Licenses

PGS Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance Metric ID
(PPM ID) 		Evaluated Score PGS Sample Set ID
(PSS ID) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		PGS Classification Metrics Other Metrics Covariates Included in the Model PGS Performance: Other Relevant Information
PPM001423 PGS000695
(snpnet.Sodium_in_urine)
 PSS000749 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Sodium in urine [mmol/L] — — R²: 0.0456
Spearman's ρ: 0.029		 Age, sex, PCs(1-40) —
PPM001458 PGS000695
(snpnet.Sodium_in_urine)
 PSS000750 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Sodium in urine [mmol/L] — — R²: 0.09743
Spearman's ρ: 0.068		 Age, sex, PCs(1-40) —
PPM001493 PGS000695
(snpnet.Sodium_in_urine)
 PSS000751 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Sodium in urine [mmol/L] — — R²: 0.11027
Spearman's ρ: 0.077		 Age, sex, PCs(1-40) —
PPM001528 PGS000695
(snpnet.Sodium_in_urine)
 PSS000752 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Sodium in urine [mmol/L] — — R²: 0.06605
Spearman's ρ: 0.059		 Age, sex, PCs(1-40) —
PPM001563 PGS000695
(snpnet.Sodium_in_urine)
 PSS000753 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Sodium in urine [mmol/L] — — R²: 0.09883
Spearman's ρ: 0.09		 Age, sex, PCs(1-40) —
PPM001588 PGS000695
(snpnet.Sodium_in_urine)
 PSS000836 PGP000128 Sinnott-Armstrong N et al. (2021) Reported Trait: Sodium in urine [mmol/L] — — Spearman's ρ: 0.059 Age, sex —

Evaluated Samples

PGS Sample Set ID
(PSS ID) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000749 — — 5,781 individuals — African unspecified — UKB —
PSS000750 — — 1,044 individuals — East Asian — UKB —
PSS000751 — — 22,812 individuals — European Non-British White UKB —
PSS000752 — — 6,993 individuals — South Asian — UKB —
PSS000753 — — 62,011 individuals — European
(British)		 — UKB —
PSS000836 — — 2,117 individuals — European Participants self-identifying as white MESA —