Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0010246 |
Description |
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Trait category |
Other trait
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Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000139 | MDDRecur | PGP000068 Cai N et al. Nat Genet (2020) |
Lifetime Major Depressive Disorder (with recurrence) | major depressive disorder recurrent |
21,980 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000139/ScoringFiles/PGS000139.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM000431 | PGS000139 (MDDRecur) |
PSS000250 | PGP000068 Cai N et al. Nat Genet (2020) |
Reported Trait: Major Depressive Disorder status | — | AUROC: 0.54874 | R²: 0.01097 | Cohort | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000250 | — | — | [
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— | European | — | 15 cohorts
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Part of PGC29 (PMID: 29700475) |