Trait: phosphate measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0010968
Description
  • Quantification of phosphate levels in a sample.
Trait category
Other measurement
Mapped term(s) PMID:33462484

Associated Polygenic Score(s)

Polygenic Score (PGS) ID PGS Name PGS Publication (PGP) ID Reported Trait Mapped Trait(s) (Ontology) Number of Variants PGS Scoring File (FTP Link)
PGS000692 snpnet.Phosphate PGP000128
Sinnott-Armstrong N et al. Nat Genet (2021)
 Phosphate [mmol/L] phosphate measurement 12,448 http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000692/ScoringFiles/PGS000692.txt.gz - Check Terms/Licenses

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance Metric ID
(PPM ID) 		Evaluated Score PGS Sample Set ID
(PSS ID) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		PGS Classification Metrics Other Metrics Covariates Included in the Model PGS Performance: Other Relevant Information
PPM001420 PGS000692
(snpnet.Phosphate)
 PSS000734 PGP000128
Sinnott-Armstrong N et al. Nat Genet (2021)
 Reported Trait: Phosphate [mmol/L] — — R²: 0.12827
Spearman's ρ: 0.115		 Age, sex, PCs(1-40) —
PPM001455 PGS000692
(snpnet.Phosphate)
 PSS000735 PGP000128
Sinnott-Armstrong N et al. Nat Genet (2021)
 Reported Trait: Phosphate [mmol/L] — — R²: 0.20287
Spearman's ρ: 0.222		 Age, sex, PCs(1-40) —
PPM001490 PGS000692
(snpnet.Phosphate)
 PSS000736 PGP000128
Sinnott-Armstrong N et al. Nat Genet (2021)
 Reported Trait: Phosphate [mmol/L] — — R²: 0.22656
Spearman's ρ: 0.253		 Age, sex, PCs(1-40) —
PPM001525 PGS000692
(snpnet.Phosphate)
 PSS000737 PGP000128
Sinnott-Armstrong N et al. Nat Genet (2021)
 Reported Trait: Phosphate [mmol/L] — — R²: 0.20962
Spearman's ρ: 0.226		 Age, sex, PCs(1-40) —
PPM001560 PGS000692
(snpnet.Phosphate)
 PSS000738 PGP000128
Sinnott-Armstrong N et al. Nat Genet (2021)
 Reported Trait: Phosphate [mmol/L] — — R²: 0.23753
Spearman's ρ: 0.255		 Age, sex, PCs(1-40) —
PPM001587 PGS000692
(snpnet.Phosphate)
 PSS000828 PGP000128
Sinnott-Armstrong N et al. Nat Genet (2021)
 Reported Trait: Phosphate [mmol/L] — — Spearman's ρ: 0.248 Age, sex —

Evaluated Samples

PGS Sample Set ID
(PSS ID) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000828 — — 2,081 individuals — European Participants self-identifying as white MESA —
PSS000734 — — 5,568 individuals — African unspecified — UKB —
PSS000735 — — 986 individuals — East Asian — UKB —
PSS000736 — — 21,497 individuals — European Non-British White UKB —
PSS000737 — — 6,685 individuals — South Asian — UKB —
PSS000738 — — 58,167 individuals — European
(British)		 — UKB —