Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0010968 |
Description |
|
Trait category |
Other measurement
|
Mapped term(s) | PMID:33462484 |
Polygenic Score (PGS) ID | PGS Name | PGS Publication (PGP) ID | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | PGS Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS000692 | snpnet.Phosphate | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Phosphate [mmol/L] | phosphate measurement | 12,448 | http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000692/ScoringFiles/PGS000692.txt.gz |
PGS Performance Metric ID (PPM ID) |
Evaluated Score |
PGS Sample Set ID (PSS ID) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
PGS Classification Metrics | Other Metrics | Covariates Included in the Model | PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM001420 | PGS000692 (snpnet.Phosphate) |
PSS000734 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Phosphate [mmol/L] | — | — | R²: 0.12827 Spearman's ρ: 0.115 |
Age, sex, PCs(1-40) | — |
PPM001455 | PGS000692 (snpnet.Phosphate) |
PSS000735 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Phosphate [mmol/L] | — | — | R²: 0.20287 Spearman's ρ: 0.222 |
Age, sex, PCs(1-40) | — |
PPM001490 | PGS000692 (snpnet.Phosphate) |
PSS000736 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Phosphate [mmol/L] | — | — | R²: 0.22656 Spearman's ρ: 0.253 |
Age, sex, PCs(1-40) | — |
PPM001525 | PGS000692 (snpnet.Phosphate) |
PSS000737 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Phosphate [mmol/L] | — | — | R²: 0.20962 Spearman's ρ: 0.226 |
Age, sex, PCs(1-40) | — |
PPM001560 | PGS000692 (snpnet.Phosphate) |
PSS000738 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Phosphate [mmol/L] | — | — | R²: 0.23753 Spearman's ρ: 0.255 |
Age, sex, PCs(1-40) | — |
PPM001587 | PGS000692 (snpnet.Phosphate) |
PSS000828 | PGP000128 Sinnott-Armstrong N et al. Nat Genet (2021) |
Reported Trait: Phosphate [mmol/L] | — | — | Spearman's ρ: 0.248 | Age, sex | — |
PGS Sample Set ID (PSS ID) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS000828 | — | — | 2,081 individuals | — | European | Participants self-identifying as white | MESA | — |
PSS000734 | — | — | 5,568 individuals | — | African unspecified | — | UKB | — |
PSS000735 | — | — | 986 individuals | — | East Asian | — | UKB | — |
PSS000736 | — | — | 21,497 individuals | — | European | Non-British White | UKB | — |
PSS000737 | — | — | 6,685 individuals | — | South Asian | — | UKB | — |
PSS000738 | — | — | 58,167 individuals | — | European (British) |
— | UKB | — |