PGS Publication: PGP000074

Publication Information (EuropePMC)
Title Evaluating the effect of multiple genetic risk score models on colorectal cancer risk prediction.
PubMed ID 29908285(Europe PMC)
doi 10.1016/j.gene.2018.06.035
Publication Date June 14, 2018
Journal Gene
Author(s) Xin J, Chu H, Ben S, Ge Y, Shao W, Zhao Y, Wei Y, Ma G, Li S, Gu D, Zhang Z, Du M, Wang M.
Released in PGS Catalog: April 29, 2020

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported

PGS Developed By This Publication

Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS000151
(SC_GRS)
PGP000074 |
Xin J et al. Gene (2018)
Colorectal cancer colorectal cancer 14
-
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000151/ScoringFiles/PGS000151.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM000471 PGS000151
(SC_GRS)
PSS000271|
East Asian Ancestry|
3,523 individuals
PGP000074 |
Xin J et al. Gene (2018)
Reported Trait: Colorectal cancer AUROC: 0.607 [0.581, 0.633] smoking status
PPM000470 PGS000151
(SC_GRS)
PSS000271|
East Asian Ancestry|
3,523 individuals
PGP000074 |
Xin J et al. Gene (2018)
Reported Trait: Colorectal cancer AUROC: 0.6 [0.579, 0.622]

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000271
[
  • 1,316 cases
  • , 2,207 controls
]
,
40.85 % Male samples
Mean (Cases) = 58.34 years
Sd (Cases) = 12.85 years
East Asian
(Han Chinese)
NCRCC