| Predicted Trait | |
| Reported Trait | Chronic obstructive pulmonary disease |
| Mapped Trait(s) | chronic obstructive pulmonary disease (MONDO_0005002) |
| Score Construction | |
| PGS Name | GRS22_COPD |
| Development Method | |
| Name | genome-wide association SNPs |
| Parameters | NR |
| Variants | |
| Original Genome Build | NR |
| Number of Variants | 22 |
| Effect Weight Type | log(OR) |
| PGS Source | |
| PGS Catalog Publication (PGP) ID | PGP000808 |
| Citation (link to publication) | Li J et al. BMC Med (2024) |
| Ancestry Distribution | |
| Source of Variant Associations (GWAS) | European: 81.2% East Asian: 11.8% African: 6% Hispanic or Latin American: 1% 58,918 individuals (100%) |
| PGS Evaluation | European: 100% 1 Sample Sets |
| Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
|---|---|---|---|
GWAS Catalog: GCST004147 Europe PMC: 28166215 |
3,522 individuals | African American or Afro-Caribbean | NR |
GWAS Catalog: GCST004147 Europe PMC: 28166215 |
600 individuals | Hispanic or Latin American | NR |
GWAS Catalog: GCST004147 Europe PMC: 28166215 |
47,856 individuals | European | NR |
GWAS Catalog: GCST004147 Europe PMC: 28166215 |
6,940 individuals | East Asian | NR |
|
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|
| PPM030710 | PSS012261| European Ancestry| 277,059 individuals |
PGP000808 | Li J et al. BMC Med (2024) |
Reported Trait: Incident COPD | HR: 1.09 [1.06, 1.12] | — | — | age, sex, and the first 10 principal components of ancestry | — |
| PPM030711 | PSS012261| European Ancestry| 277,059 individuals |
PGP000808 | Li J et al. BMC Med (2024) |
Reported Trait: Incident COPD x current work schedule interaction | — | — | Hazard ratio (HR, usual/permanent night shift and high PRS vs. day workers and low PRS): 1.9 [1.63, 2.22] | age, sex, BMI, Townsend deprivation index, sleep duration, smoking status, alcohol drinking, IPAQ activity group, chronotype, asthma | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS012261 | — | — | 277,059 individuals, 48.03 % Male samples |
Mean = 52.71 years Sd = 7.08 years |
European | — | UKB | — |