| Predicted Trait | |
| Reported Trait | cisplatin-induced ototoxicity (CIO) |
| Mapped Trait(s) | |
| Score Construction | |
| PGS Name | pgscio |
| Development Method | |
| Name | SBayesR |
| Parameters | NR |
| Variants | |
| Original Genome Build | GRCh38 |
| Number of Variants | 138,670 |
| Effect Weight Type | beta |
| PGS Source | |
| PGS Catalog Publication (PGP) ID | PGP000832 |
| Citation (link to publication) | Miao DNR et al. Hum Genomics (2024) |
| Ancestry Distribution | |
| Source of Variant Associations (GWAS) | European: 100% 330,759 individuals (100%) |
| PGS Evaluation | |
| Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
|---|---|---|---|
GWAS Catalog: GCST90012115 Europe PMC: 32986727 |
330,759 individuals | European | UKB |
|
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|
| PPM036592 | PSS012317| Multi-ancestry (including European)| 390 individuals |
PGP000832 | Miao DNR et al. Hum Genomics (2024) |
Reported Trait: cisplatin-induced ototoxicity | — | — | R²: 0.041 p-value: 6e-05 |
— | — |
| PPM036594 | PSS012318| Ancestry Not Reported| 238 individuals |
PGP000832 | Miao DNR et al. Hum Genomics (2024) |
Reported Trait: cisplatin-induced ototoxicity | — | AUROC: 0.732 [0.668, 0.797] | R²: 0.024 p-value: 0.043 |
age at diagnosis , protocol (SJMB96 or SJMB03) , 10 principal components , craniospinal irradiation dose (CSI dose)*score | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS012317 | — | — | [ ,
46.0 % Male samples |
— | African American or Afro-Caribbean, European, Hispanic or Latin American | 92% European and 8% non-European ancestry (African-American/African-Caribbean and Latin American) | PCL | — |
| PSS012318 | — | — | [ ,
62.0 % Male samples |
— | Not reported | — | NR | — |