| Predicted Trait | |
| Reported Trait | Hip osteoarthritis |
| Mapped Trait(s) | osteoarthritis, hip (MONDO_0006629) |
| Score Construction | |
| PGS Name | PRS_hip |
| Development Method | |
| Name | genome-wide significant SNPs |
| Parameters | NR |
| Variants | |
| Original Genome Build | GRCh37 |
| Number of Variants | 70 |
| Effect Weight Type | log(OR) |
| PGS Source | |
| PGS Catalog Publication (PGP) ID | PGP000833 |
| Citation (link to publication) | Wei Y et al. Clin Nutr (2024) |
| Ancestry Distribution | |
| Source of Variant Associations (GWAS) | European: 100% 353,388 individuals (100%) |
| PGS Evaluation | European: 100% 1 Sample Sets |
| Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
|---|---|---|---|
GWAS Catalog: GCST90034522 Europe PMC: 34450027 |
353,388 individuals | European | 10 cohorts
|
|
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|
| PPM036595 | PSS012319| European Ancestry| 163,987 individuals |
PGP000833 | Wei Y et al. Clin Nutr (2024) |
Reported Trait: Hip osteoarthritis | — | — | Hazard ratio (HR, high vs low tertile): 1.76 [1.62, 1.9] | age, sex, BMI, education levels, Townsend deprivation index, physical activity, ethnic background, smoking status, drinking status, family history of diseases (hypertension, cardiovascular disease, and diabetes), depression, chondroitin product intake, 10 genetic principal components, genotype measurement batch, healthy dietary score and total energy intake | — |
| PPM036597 | PSS012319| European Ancestry| 163,987 individuals |
PGP000833 | Wei Y et al. Clin Nutr (2024) |
Reported Trait: Hip osteoarthritis x ultra-processed food (UPF) consumption interaction | — | — | Hazard ratio (HR, high UPF consumption and high PRS vs. low UPF consumption and low PRS): 1.82 [1.54, 2.15] | age, sex, BMI, education levels, Townsend deprivation index, physical activity, ethnic background, smoking status, drinking status, family history of diseases (hypertension, cardiovascular disease, and diabetes), depression, chondroitin product intake, 10 genetic principal components, genotype measurement batch, healthy dietary score and total energy intake | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS012319 | — | — | 163,987 individuals, 45.1 % Male samples |
Mean = 55.5 years Sd = 7.9 years |
European | — | UKB | — |